View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15054_low_21 (Length: 237)
Name: NF15054_low_21
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15054_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 32403507 - 32403295
Alignment:
| Q |
10 |
agcagagacaacaaaaatcttgacatgtgaccacaatttgcggtcacgaaccgttatgtgaattaccttaaagtctgaaggataatcaaatatagcaggg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32403507 |
agcagagacaacaaaaatcttgacatgtgaccacaatttgcggtcacgaaccgttatgtgaattaccttaaagtctgaaggataatcaaatatagcaggg |
32403408 |
T |
|
| Q |
110 |
cattttccacctagctctagagtaacaggagttaaatttcttgcagcagaagacatgactatgcttgccacacgtggacttcctgaaaatgtcatacatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32403407 |
cattttccacctagctctagagtaacaggagttaaatttcttgcagcagaagacatgactatgcttgccacacgtggacttcctgaaaatgtcatacatc |
32403308 |
T |
|
| Q |
210 |
atgtagagataat |
222 |
Q |
| |
|
||||||||||||| |
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| T |
32403307 |
atgtagagataat |
32403295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 90 - 192
Target Start/End: Original strand, 6664628 - 6664730
Alignment:
| Q |
90 |
gataatcaaatatagcagggcattttccacctagctctagagtaacaggagttaaatttcttgcagcagaagacatgactatgcttgccacacgtggact |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6664628 |
gataatcaaatatagcagggcattttccacctagctctagagtaacaggagttaaatatcttgcagcagaagacatgactatgcttgccacacgtggact |
6664727 |
T |
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| Q |
190 |
tcc |
192 |
Q |
| |
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||| |
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| T |
6664728 |
tcc |
6664730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 43304827 - 43304928
Alignment:
| Q |
90 |
gataatcaaatatagcagggcattttccacctagctctagagtaacaggagttaaatttcttgcagcagaagacatgactatgcttgccacacgtggact |
189 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43304827 |
gataatcaaatatagcagggcattttccacctagctctcgagtaacaggagttaaatatcttgcagcaaaagacatgactatgcttgccacacgtggact |
43304926 |
T |
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| Q |
190 |
tc |
191 |
Q |
| |
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|| |
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|
| T |
43304927 |
tc |
43304928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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