View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15054_low_25 (Length: 205)

Name: NF15054_low_25
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15054_low_25
NF15054_low_25
[»] chr3 (4 HSPs)
chr3 (16-187)||(13431585-13431756)
chr3 (16-119)||(21542461-21542564)
chr3 (16-137)||(24793234-24793354)
chr3 (16-52)||(29709533-29709569)
[»] chr2 (4 HSPs)
chr2 (16-119)||(40409214-40409317)
chr2 (16-120)||(22908965-22909069)
chr2 (16-137)||(22901869-22901989)
chr2 (42-137)||(23721722-23721816)
[»] chr7 (9 HSPs)
chr7 (16-118)||(33090977-33091079)
chr7 (16-119)||(41027327-41027430)
chr7 (16-137)||(42595140-42595260)
chr7 (16-120)||(13285966-13286070)
chr7 (16-137)||(15988834-15988954)
chr7 (16-120)||(12827540-12827644)
chr7 (16-119)||(40701710-40701813)
chr7 (16-120)||(2992088-2992192)
chr7 (16-120)||(31824505-31824609)
[»] chr8 (4 HSPs)
chr8 (16-115)||(18536376-18536475)
chr8 (28-119)||(37816656-37816748)
chr8 (16-120)||(14437158-14437262)
chr8 (16-120)||(17268626-17268730)
[»] chr5 (2 HSPs)
chr5 (16-121)||(36316145-36316250)
chr5 (16-137)||(19548634-19548754)
[»] chr1 (6 HSPs)
chr1 (16-120)||(34822810-34822914)
chr1 (16-120)||(52955470-52955574)
chr1 (16-122)||(2370577-2370683)
chr1 (16-137)||(1989654-1989774)
chr1 (16-120)||(1186592-1186696)
chr1 (16-120)||(18383146-18383250)
[»] chr6 (5 HSPs)
chr6 (16-187)||(8563356-8563526)
chr6 (16-120)||(22223772-22223876)
chr6 (16-120)||(22249607-22249711)
chr6 (16-55)||(9761692-9761731)
chr6 (16-120)||(27787740-27787844)
[»] chr4 (6 HSPs)
chr4 (16-122)||(30651344-30651450)
chr4 (16-120)||(13793239-13793343)
chr4 (16-120)||(26458131-26458235)
chr4 (16-120)||(6406003-6406107)
chr4 (16-120)||(9836239-9836343)
chr4 (16-120)||(17421503-17421607)
[»] scaffold0059 (1 HSPs)
scaffold0059 (16-137)||(40757-40877)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-136)||(241850-241968)
[»] scaffold0535 (1 HSPs)
scaffold0535 (16-120)||(1101-1205)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 13431756 - 13431585
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  13431756 aatatcatcctatatgttacacatactgcacttcattgatatttcattattagaacttgattatatcaaataagggtcttacaaatcatcttaagtgaaa 13431657  T
Q  116 caaaaaggtacattatgaagtctctgaagttcaggaaattcattccagctacatgctttatcttacatgaac 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13431656 caaaaaggtacattatgaagtctctgaagttcaggaaattcattccagctacatgctttatcttacatgaac 13431585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 21542564 - 21542461
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||||||||||| || ||||||||| || ||  | ||| | ||||||| || |||| || |||||| |||| ||| ||| |||||    
T  21542564 aatatcatcctagatgttacacatactacatttcattgatgttacactactaggatttgattacattaaatgagagtcttacaaataatcctaagtgaaa 21542465  T
Q  116 caaa 119  Q
    ||||    
T  21542464 caaa 21542461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 24793234 - 24793354
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||    || |||||||||||  || |||||  ||||| | ||||||| |||||||||| |||||  |||||||| ||| |||||    
T  24793234 aatatcatcctagatgttttctatgctgcacttcataaatgtttcactattaggatttgattacatcaaataagagtcttgcaaatcatcctaagtgaaa 24793333  T
Q  116 caaaaaggtacattatgaagtc 137  Q
    | |||||| ||||| |||||||    
T  24793334 c-aaaaggaacattctgaagtc 24793354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 29709569 - 29709533
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcatt 52  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  29709569 aatatcatcctagatgttatacatattgcacttcatt 29709533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 40409317 - 40409214
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||  ||||||  ||||||| ||||||| || |||||| ||||| || ||| |||||    
T  40409317 aatatcatcctagatgttacacatactacacttcattgatgtttcactattagagtttgattacatcaaatgagagtcttacaaatcttcctaagtgaaa 40409218  T
Q  116 caaa 119  Q
    ||||    
T  40409217 caaa 40409214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 22909069 - 22908965
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| || ||||||||  || |||||| ||||| | ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  22909069 aatatcatcctagatgttttccatgctccacttcataaatgtttcattattaggatttgattacatcaaataagagtcttacaaatcatcctaagtgaaa 22908970  T
Q  116 caaaa 120  Q
    |||||    
T  22908969 caaaa 22908965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 22901869 - 22901989
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   |||  ||||||||||  || |||||  ||||| | ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  22901869 aatatcatcctagatgttttccatgttgcacttcataaatgtttcactattaggatttgattacatcaaataagagtcttacaaatcatcctaactgaaa 22901968  T
Q  116 caaaaaggtacattatgaagtc 137  Q
    | |||||| ||||| |||||||    
T  22901969 c-aaaaggaacattctgaagtc 22901989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 23721722 - 23721816
Alignment:
Q  42 tgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaacaaaaaggtacattatgaagtc 137  Q
    ||||||||||  || |||||  ||||| | ||||||| |||||||||| |||||| |||||||| ||| |||||||||| || |||||||||||||    
T  23721722 tgcacttcataaatgtttcactattaggatttgattacatcaaataagagtcttacaaatcatcctaagtgaaacaaaa-ggaacattatgaagtc 23721816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 33090977 - 33091079
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||||| ||||||||||||||  || |||||  ||||| | ||||||| ||||||| || |||||| |||||||| ||| |||||    
T  33090977 aatatcatcctagatgttacatatactgcacttcatcaatgtttcactattaggatttgattacatcaaatgagagtcttacaaatcatcctaagtgaaa 33091076  T
Q  116 caa 118  Q
    |||    
T  33091077 caa 33091079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 41027327 - 41027430
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  ||||||||  ||||| | ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  41027327 aatatcatcctagatgttttccatgctgcacttcataaatatttcactattaggatttgattacatcaaataagagtcttacaaatcatcctaagtgaaa 41027426  T
Q  116 caaa 119  Q
    ||||    
T  41027427 caaa 41027430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 42595140 - 42595260
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   |||||||||||||||  || |||||  ||||| | ||||||| ||||| |||| |||||| |||||||| ||| |||||    
T  42595140 aatatcatcctagatgttttccatactgcacttcataaatgtttcactattaggatttgattacatcaattaagagtcttacaaatcatcctaagtgaaa 42595239  T
Q  116 caaaaaggtacattatgaagtc 137  Q
    | |||||| ||||| |||||||    
T  42595240 c-aaaaggaacattctgaagtc 42595260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 13286070 - 13285966
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || |||||  ||||| | ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  13286070 aatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacatcaaataagagtcttacaaatcatcctaagtgaaa 13285971  T
Q  116 caaaa 120  Q
    |||||    
T  13285970 caaaa 13285966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 15988954 - 15988834
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || |||||  ||||| | ||||||| |||||||||  |||||| |||||||| ||| |||||    
T  15988954 aatatcatcctagatgttttccatgctgcacttcatcaatgtttcactattaggatttgattacatcaaataacagtcttacaaatcatcctaagtgaaa 15988855  T
Q  116 caaaaaggtacattatgaagtc 137  Q
    | |||||| ||||| |||||||    
T  15988854 c-aaaaggaacattctgaagtc 15988834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 12827644 - 12827540
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   |||  ||||||||||  || |||||  ||||| | ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  12827644 aatatcatcctagatgttttccatgttgcacttcatcaatgtttcactattaggatttgattacatcaaataagagtcttacaaatcatcctaagtgaaa 12827545  T
Q  116 caaaa 120  Q
    |||||    
T  12827544 caaaa 12827540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 40701710 - 40701813
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    |||||||| |||||||||| ||| ||||||||||| |||| |||||| ||||| | ||||||| |||||||    |||||| |||| ||| ||| |||||    
T  40701710 aatatcattctagatgttatacacactgcacttcaatgatgtttcattattaggatttgattacatcaaatggtagtcttacaaattatcctaagtgaaa 40701809  T
Q  116 caaa 119  Q
    ||||    
T  40701810 caaa 40701813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 2992192 - 2992088
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    |||||||||||||||||||||   ||| | |||||||| | |||||  ||||| | ||||||| |||||||    |||||| |||||||| |||||||||    
T  2992192 aatatcatcctagatgttacaatcacttctcttcattgttgtttcactattaggatttgattacatcaaatggtagtcttagaaatcatcctaaatgaaa 2992093  T
Q  116 caaaa 120  Q
    |||||    
T  2992092 caaaa 2992088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 31824505 - 31824609
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || |||||  ||||| | ||||||| ||||| ||   |||||| |||||||| ||| |||||    
T  31824505 aatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacatcaattacaagtcttacaaatcatcctaagtgaaa 31824604  T
Q  116 caaaa 120  Q
    |||||    
T  31824605 caaaa 31824609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 18536376 - 18536475
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||| ||| ||||| |||||||||||||| |||||  ||||||| ||||||| ||||||| || || ||| |||||||| ||| |||||    
T  18536376 aatatcatcctagatcttatacatagtgcacttcattgatgtttcactattagaatttgattacatcaaatgagagttttacaaatcatcctaagtgaaa 18536475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 37816656 - 37816748
Alignment:
Q  28 gatgttacacatac-tgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaacaaa 119  Q
    |||||| ||||||| |||||||||||||| |||||  ||||||| ||||||| ||||||| || |||||| |||||||| ||| |||||||||    
T  37816656 gatgtttcacatacctgcacttcattgatgtttcactattagaatttgattacatcaaatgagagtcttacaaatcatcctaagtgaaacaaa 37816748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 14437158 - 14437262
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || |||||  ||||| | ||||||| ||||| ||   |||||| |||||||| ||| |||||    
T  14437158 aatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacatcaattacaagtcttacaaatcatcctaagtgaaa 14437257  T
Q  116 caaaa 120  Q
    |||||    
T  14437258 caaaa 14437262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 17268626 - 17268730
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||  |   ||||| |||||||| | |||||| ||||| | ||||||| |||||||    |||||| |||||||| ||| |||||    
T  17268626 aatatcatcctagatgttgaagtcactgctcttcattgttgtttcattattaggatttgattacatcaaatggtagtcttacaaatcatcctaagtgaaa 17268725  T
Q  116 caaaa 120  Q
    |||||    
T  17268726 caaaa 17268730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 36316145 - 36316250
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| ||||||||||| ||| || ||  ||||| | ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  36316145 aatatcatcctagatgttttccatgctgcacttcatcgatgttccactattaggatttgattacatcaaataagagtcttacaaatcatcctaagtgaaa 36316244  T
Q  116 caaaaa 121  Q
    ||||||    
T  36316245 caaaaa 36316250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 19548754 - 19548634
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   |||  ||||||||||  || |||||  ||||| | ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  19548754 aatatcatcctagatgtttttcatgttgcacttcataaatgtttcactattaggatttgattacatcaaataagagtcttacaaatcatcctaagtgaaa 19548655  T
Q  116 caaaaaggtacattatgaagtc 137  Q
    | |||||  |||||||||||||    
T  19548654 c-aaaagaaacattatgaagtc 19548634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 34822810 - 34822914
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    |||||||| |||||||||||| | |||||||||||||| | |||||  ||||| | ||||||| ||||||| |  |||||| |||||||| ||| |||||    
T  34822810 aatatcatactagatgttacaaacactgcacttcattgttgtttcactattaggatttgattacatcaaatgatagtcttacaaatcatcctaagtgaaa 34822909  T
Q  116 caaaa 120  Q
    |||||    
T  34822910 caaaa 34822914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 52955574 - 52955470
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||  |||||||||||  || |||||  ||||||| ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  52955574 aatatcatcctagatgttttccacgctgcacttcataaatgtttcactattagaatttgattacatcaaataagagtcttacaaatcatcctaagtgaaa 52955475  T
Q  116 caaaa 120  Q
    |||||    
T  52955474 caaaa 52955470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 2370683 - 2370577
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||| |   | ||| |||||||| | |||||  ||||| | ||||||| |||||||    ||||||||||||||| ||| |||||    
T  2370683 aatatcatcctagatgttaaaatcattgctcttcattgttttttcactattaggatttgattacatcaaatggtagtcttataaatcatcataagtgaaa 2370584  T
Q  116 caaaaag 122  Q
    |||||||    
T  2370583 caaaaag 2370577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 1989774 - 1989654
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  ||  ||||  ||||| | ||||||| ||||||||   |||||| |||||||| ||| |||||    
T  1989774 aatatcatcctagatgttttccatgctgcacttcataaatgcttcactattaggatttgattacatcaaatacaagtcttacaaatcatcctaagtgaaa 1989675  T
Q  116 caaaaaggtacattatgaagtc 137  Q
    | |||||  |||||||||||||    
T  1989674 c-aaaagaaacattatgaagtc 1989654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 1186696 - 1186592
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    |||||||||||||||||||||    |||| |||||||| | |||||  ||||| | ||||||| |||||||    |||||| |||||||| ||| |||||    
T  1186696 aatatcatcctagatgttacaatctctgctcttcattgttgtttcactattaggatttgattacatcaaatggaagtcttacaaatcatcataagtgaaa 1186597  T
Q  116 caaaa 120  Q
    |||||    
T  1186596 caaaa 1186592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 18383146 - 18383250
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||| |   ||||| |||||||| | |||||  ||||| | || |||| ||||||| |  |||||| |||||||| ||| |||||    
T  18383146 aatatcatcctagatgttaaattcactgctcttcattgttgtttcactattaggatttaattacatcaaatgatagtcttacaaatcatcctaagtgaaa 18383245  T
Q  116 caaaa 120  Q
    |||||    
T  18383246 caaaa 18383250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 8563526 - 8563356
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || |||||  ||||| | ||||||| ||||| |||| |||||| |||||||| ||| |||||    
T  8563526 aatatcatcctagatgttttccatgctgcacttcataaatgtttcaatattaggatttgattacatcaattaagagtcttacaaatcatcctaagtgaaa 8563427  T
Q  116 caaaaaggtacattatgaagtctctgaagttcaggaaattcattccagctacatgctttatcttacatgaac 187  Q
    | |||||| ||||| ||||||| |  |||||||| || |||  ||  ||| |||||||| ||| ||||||||    
T  8563426 c-aaaaggaacattctgaagtcccctaagttcagaaagttcgatcttgctccatgctttttctgacatgaac 8563356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 22223876 - 22223772
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || |||||  ||||| | ||||||| ||||| |||  |||||| |||||||| ||| |||||    
T  22223876 aatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacatcaattaaaagtcttacaaatcatcctaagtgaaa 22223777  T
Q  116 caaaa 120  Q
    |||||    
T  22223776 caaaa 22223772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 22249711 - 22249607
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || |||||  ||||| | ||||||| ||||| |||  |||||| |||||||| ||| |||||    
T  22249711 aatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacatcaattaaaagtcttacaaatcatcctaagtgaaa 22249612  T
Q  116 caaaa 120  Q
    |||||    
T  22249611 caaaa 22249607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 9761731 - 9761692
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgat 55  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  9761731 aatatcatcctagatgttatacacactgcacttcattgat 9761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 27787844 - 27787740
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    |||||||||||||||||||||   ||||| |||||||| | |||||  ||||| |  |||||| |||||||    |||||| |||||||| ||| |||||    
T  27787844 aatatcatcctagatgttacaatcactgctcttcattgttgtttcactattaggatatgattacatcaaatggtagtcttacaaatcatcctaagtgaaa 27787745  T
Q  116 caaaa 120  Q
    |||||    
T  27787744 caaaa 27787740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 30651344 - 30651450
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || || |   ||||||| ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  30651344 aatatcatcctagatgttttccatgctgcacttcatcaatgttcctctattagaatttgattacatcaaataagagtcttacaaatcatcctaagtgaaa 30651443  T
Q  116 caaaaag 122  Q
    |||||||    
T  30651444 caaaaag 30651450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 13793343 - 13793239
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    |||||||||||||||||||||   ||||| |||||||| | |||||  ||||| | ||||||| |||||||    |||||| |||||||| |||||||||    
T  13793343 aatatcatcctagatgttacaatcactgctcttcattgttgtttcactattaggatttgattacatcaaatggtagtcttacaaatcatcctaaatgaaa 13793244  T
Q  116 caaaa 120  Q
    |||||    
T  13793243 caaaa 13793239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 26458131 - 26458235
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| | |||||||||  || |||||  ||||| | ||||||| |||||||||| |||||| |||||||| ||| |||||    
T  26458131 aatatcatcctagatgttttccatgcagcacttcataaatgtttcactattaggagttgattacatcaaataagagtcttacaaatcatcctaagtgaaa 26458230  T
Q  116 caaaa 120  Q
    |||||    
T  26458231 caaaa 26458235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 6406107 - 6406003
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    |||||| ||||||||||||||   | ||  |||||||| | |||||  ||||||| ||||||| ||||||||   |||||| |||||||| ||| |||||    
T  6406107 aatatcttcctagatgttacaatcattgatcttcattgttgtttcactattagaatttgattacatcaaatagaagtcttacaaatcatcataagtgaaa 6406008  T
Q  116 caaaa 120  Q
    |||||    
T  6406007 caaaa 6406003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 9836343 - 9836239
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||  |   ||||| |||||||| | |||||  ||||| | |||||||||||||||    |||||| |||||||| ||| |||||    
T  9836343 aatatcatcctagatgttttaatcactgctcttcattgttgtttcactattaggatttgattatatcaaatggtagtcttacaaatcatcctaagtgaaa 9836244  T
Q  116 caaaa 120  Q
    |||||    
T  9836243 caaaa 9836239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 17421607 - 17421503
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || |||||  ||||| | ||||||| ||||| ||   |||||| |||||||| ||| |||||    
T  17421607 aatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggaattgattacatcaattacaagtcttacaaatcatcctaagtgaaa 17421508  T
Q  116 caaaa 120  Q
    |||||    
T  17421507 caaaa 17421503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 40877 - 40757
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   |||| ||||||||||||||||||||| || |  | ||  ||| |||||||  | |||| | |||||||| ||| |||||    
T  40877 aatatcatcctagatgtttttcatattgcacttcattgatatttcattatgaagatttccttacatcaaatgggagtctcacaaatcatcctaagtgaaa 40778  T
Q  116 caaaaaggtacattatgaagtc 137  Q
    | |||||| |||||||||||||    
T  40777 c-aaaaggaacattatgaagtc 40757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 241968 - 241850
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||| ||| ||| |||||||||||| | | |  ||||| |  |||||| ||||||||   |||||| |||||||| ||| |||||    
T  241968 aatatcatcctagatgttatacacactacacttcattgatgtattactattaggatctgattacatcaaatagaagtcttacaaatcatcctaagtgaaa 241869  T
Q  116 caaaaaggtacattatgaagt 136  Q
    |  ||||| ||||||||||||    
T  241868 c--aaaggaacattatgaagt 241850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 1205 - 1101
Alignment:
Q  16 aatatcatcctagatgttacacatactgcacttcattgatatttcataattagaacttgattatatcaaataagggtcttataaatcatcttaaatgaaa 115  Q
    ||||||||||||||||||   ||| |||||||||||  || |||||  ||||  |||  |||| |||||||||| |||||| |||||||| ||| ||||     
T  1205 aatatcatcctagatgttttccatgctgcacttcatcaatgtttcactattaagactcaattacatcaaataagagtcttacaaatcatcctaagtgaac 1106  T
Q  116 caaaa 120  Q
    |||||    
T  1105 caaaa 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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