View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15054_low_6 (Length: 468)
Name: NF15054_low_6
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15054_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 453
Target Start/End: Original strand, 4631661 - 4632103
Alignment:
| Q |
12 |
atagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631661 |
atagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggat |
4631760 |
T |
|
| Q |
112 |
tagctttggctttgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagat |
211 |
Q |
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| T |
4631761 |
tagctttggctttgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagat |
4631860 |
T |
|
| Q |
212 |
agtatcgttgaagtggccacaattcactgctaaaatatcatacaagctgttaacctctagagggaacaacaaaagatgaaggagaaacaaaatactagac |
311 |
Q |
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| T |
4631861 |
agtatcgttgaagtggccacaattcactgctaaaatatcatacaagctgttaacctctagagggaacaacaaaagatgaaggagaaacaaattactagac |
4631960 |
T |
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| Q |
312 |
agtagggtgattttactaggaactatgttctttaggaggttggccatagctaaagaatttttgttgaagtttgtcatgcaagaagttgcatttattgagg |
411 |
Q |
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| T |
4631961 |
agtagggtgattttactaggaactatgttctttaggaggttggccatagctaaagaatttttgttgaagtttgccatgcaagaagttgcatttattgagg |
4632060 |
T |
|
| Q |
412 |
ggg-aacgtgtatattggatgagaaaataatgtttgaactttc |
453 |
Q |
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| T |
4632061 |
gggaaacgtgtatattggatgggaaaataatgtttgaactttc |
4632103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 32 - 453
Target Start/End: Original strand, 4667683 - 4668096
Alignment:
| Q |
32 |
agaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggattagctttggctttgaaagac |
131 |
Q |
| |
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|||||| ||||||||||||| ||||| || ||||||||||||| || ||||| | ||||||| ||||||||||||||||||||||||||| | ||| |
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| T |
4667683 |
agaaaatgagaatgtgaaatcggaaaatgatatacgtgcagaggaaaatggaatatgattaacagaatcagagttaggattagctttggcttttacagat |
4667782 |
T |
|
| Q |
132 |
gggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagatagtatcgttgaagtggccac |
231 |
Q |
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| T |
4667783 |
atga------tttgtggttcaatgacagagaagagtttggtatcatcattgtccccaacccaggttcgattttcaaagatagtatctatggaatgaccac |
4667876 |
T |
|
| Q |
232 |
aattcactgctaaaatatcatacaagctgttaacctctagagggaacaacaaaagatgaaggagaaacaaaatactagacagtagggtgattttactagg |
331 |
Q |
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|||| || ||||||| |||||| ||||||||||| | ||||| |||||| | |||||||||||||||||| || ||||||||| ||| |||| |||||| |
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| T |
4667877 |
aatttacagctaaaacatcatatgagctgttaaccgcgagaggaaacaacgatagatgaaggagaaacaaagtaatagacagtaaggttatttcactagg |
4667976 |
T |
|
| Q |
332 |
aactatgttctttaggaggttggccatagctaaagaatttttgttgaagtttgtcatgcaagaagttgcatttattgagggggaacgtgtatattggatg |
431 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||||||| ||||| || |||||||||||||||||||||||||| |||||||| ||||||| | |
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| T |
4667977 |
aactatgttctttagggagttggccataactagagaatttttgtcgaagtatgccatgcaagaagttgcatttattgaggtggaacgtg--tattggacg |
4668074 |
T |
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| Q |
432 |
agaaaataatgtttgaactttc |
453 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
4668075 |
ggaaaataatgttccaactttc |
4668096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 12 - 280
Target Start/End: Complemental strand, 18925115 - 18924850
Alignment:
| Q |
12 |
atagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggat |
111 |
Q |
| |
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||||||| ||| | || ||||| ||| ||||||||||| || ||||| ||||||||||| ||||| || |||||| | ||||||| |||||||||||| | |
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| T |
18925115 |
atagggctattagcgacggaaggaaatgagaatgtgaagttggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggt |
18925016 |
T |
|
| Q |
112 |
tagctttggctttgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagat |
211 |
Q |
| |
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| | ||||| ||||| ||| | | ||| || |||||||||||||||||||||| |||||||| |||| |||| |||||||| |||||||||||||| | |
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| T |
18925015 |
tgggtttggatttgatagatgaaaattcagtctgtggttcaatgatagagaatagtttggtgtcatccatgtcaccaacccaggttcgattttcaaatgt |
18924916 |
T |
|
| Q |
212 |
agtatcgttgaagtggccacaattcactgctaaaatatcatacaagctgttaacctctagagggaacaa |
280 |
Q |
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||||| || ||||||||||||||| |||||| ||||||| | ||||||| ||||||||||||| |
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| T |
18924915 |
tgtatctatggagtggccacaattcagggctaaattatcataaga---gttaaccactagagggaacaa |
18924850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 18924819 - 18924760
Alignment:
| Q |
317 |
ggtgattttactaggaactatgttctttaggaggttggccatagctaaagaatttttgttg |
377 |
Q |
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|||||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
18924819 |
ggtgattttagtaagaactatgttctttaggtagttggccat-tctaaagaatttttgttg |
18924760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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