View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_high_1 (Length: 1048)
Name: NF15055_high_1
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 1293634 - 1294162
Alignment:
| Q |
1 |
cgtattttttgtggacaccgaattcactaccgatggcttctcggcaatcaccgatttcaactccaatggccacaccaaccaattctctctgcaagtgcnn |
100 |
Q |
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| T |
1293634 |
cgtattgtttgtggacaccgaattcatctccgatgaattctccgaaatcgccgattacttctccggtggcctcaccaatgaattctctctgcaagtgcaa |
1293733 |
T |
|
| Q |
101 |
nnnnngcaattcaactggttcatcttcgagttcttcatcatcttcgcgatggaagtttctgagcttactccggcgaagcaaaagcgacggaaaagagtca |
200 |
Q |
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| T |
1293734 |
gaaaagcaattcaactggttcatcttcgagttcttcatcatcttctcgatggaagtttctgagcttactccggcgaagcaaaagcgacggaaaagagtct |
1293833 |
T |
|
| Q |
201 |
ttgaatatgttaataccggcgaaaaaggagaatttaaagaagctgagtaccggtgagaaaaacgttgccgnnnnnnngattccggtgaaggagaagaaaa |
300 |
Q |
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| T |
1293834 |
ttgaatttattaactccggtgaaaaaggagaatttaaagaagctgaatagtggtgaaaaaaacgttgccggaaaaaagattccggtaacggagaagaaaa |
1293933 |
T |
|
| Q |
301 |
ctccggcaacggtgtcggcgatggaagtgttttatagaagaaagaaagagtcgagggtaaaatcgtatttaccatataagaaagagttaattgggtttag |
400 |
Q |
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| T |
1293934 |
ctccggcgacagtgtcggcgatggaagtgttttatagaagaaagaaagagtcgagggtaaaatcgtatttaccatataagaaagagttaattgggtttag |
1294033 |
T |
|
| Q |
401 |
tgttggttttaatgctaatattggaagaggttttcctcttcatgtttgattaattattaaatctgatttgtaactatttctggattaggactataggtta |
500 |
Q |
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| T |
1294034 |
tgttggttttaatgctaatattggaagaggttttcctcttcatgtttgattaattattaaatctgatttgtaactattcctagattaggactataggtta |
1294133 |
T |
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| Q |
501 |
attttgaggttttaatttgtaatataatt |
529 |
Q |
| |
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| T |
1294134 |
attttgaggttttaatttgtaatataatt |
1294162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 813 - 1037
Target Start/End: Original strand, 1294428 - 1294651
Alignment:
| Q |
813 |
ttgcgattgaatcaaatgtaatacggtgtgtcttattgattgagtaatttgtgcgtggtacaaaattaacattatgataagagagtgaacataatgtttg |
912 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1294428 |
ttgcgattgaatcaaatgtaatacggtgtgt-ttattgattgagtaatttgtgcgtagtacaaaattaacattatgataagagagtgaacataatgtttg |
1294526 |
T |
|
| Q |
913 |
tgtgtgctgcagattgtgggtatctctgatgtgtgtttttaaggtgttgtttggctgcatttaagggaggagctcattatgttaagggcaaattttctga |
1012 |
Q |
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| T |
1294527 |
tgtgtgctgcagattgtgggtatctctgatgtgtgtttttaaggtgttgtgtggctgcatttaagggaggagctcattctgttaaaggcaaattttctga |
1294626 |
T |
|
| Q |
1013 |
tgtttatacttttgaatttgtgatg |
1037 |
Q |
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| T |
1294627 |
tgtttatacttttgaatttgtgatg |
1294651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 106 - 451
Target Start/End: Original strand, 1304292 - 1304634
Alignment:
| Q |
106 |
gcaattcaactggttcatcttcgagttcttcatcatcttcgcgatggaagtttctgagcttactccggcgaagcaaaagcgacggaaaagagtcattgaa |
205 |
Q |
| |
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|||||||||||||||| ||||||| | ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
1304292 |
gcaattcaactggttcgtcttcgaatacttcatc---ttcgcgatggaagtttctaagcttactacggcgaagcaaaagcgacggaaaagagtcgttgaa |
1304388 |
T |
|
| Q |
206 |
tatgttaataccggcgaaaaaggagaatttaaagaagctgagtaccggtgagaa---aaacgttgccgnnnnnnngattccggtgaaggagaagaaaact |
302 |
Q |
| |
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|||| ||| || || |||||||||||||||||| |||| || ||||| || |||||||| | |||||||| || ||||||||||||| |
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| T |
1304389 |
tatggtaactccagcaaaaaaggagaatttaaag---ctgaatagcggtggcaatggaaacgttgttggaaaaaagattccggcgacggagaagaaaact |
1304485 |
T |
|
| Q |
303 |
ccggcaacggtgtcggcgatggaagtgttttatagaagaaagaaagagtcgagggtaaaatcgtatttaccatataagaaagagttaattgggtttagtg |
402 |
Q |
| |
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| T |
1304486 |
ccggcgacagtgtcggcgatggaagtgttttatggaagaaagaaagagacgagggtaaaatcgtatttaccttataagaaagagttaattgggtttagtg |
1304585 |
T |
|
| Q |
403 |
ttggttttaatgctaatattggaagaggttttcctcttcatgtttgatt |
451 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1304586 |
ttgggtttaatgctaatgttggaagaggttttcctcttcatgtttgatt |
1304634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 167; E-Value: 7e-89
Query Start/End: Original strand, 594 - 810
Target Start/End: Original strand, 1294228 - 1294450
Alignment:
| Q |
594 |
aaattctatgatgtttaagtgagacaaattttgcattatgttgtttctatcattgaatctaatgtaatatgatgagtcttat-gaacgaataattagcgt |
692 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| || |
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| T |
1294228 |
aaattctatgatgtttaagtgagacaaattttgtattatgttgtttctaccattgaatctaatataatatgatgagtcttatcgaacgaataattagggt |
1294327 |
T |
|
| Q |
693 |
gtaggtcaaaattaacattacgatcgaagaatgaaata-----gttttaaggtgaagtgttacattacatgtcttgcatcatgtagatattgtgtaagac |
787 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1294328 |
gtaggtcaaaattaacattacgatcgtagaatgaaatataatagttttaaggtgaagtgttacattacatgtcttgcatcatgtagatattgtgcaagat |
1294427 |
T |
|
| Q |
788 |
ttgcgattgaatcaaatgtaata |
810 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
1294428 |
ttgcgattgaatcaaatgtaata |
1294450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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