View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_high_12 (Length: 313)
Name: NF15055_high_12
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 11441408 - 11441701
Alignment:
| Q |
1 |
aaagttcaactttgatagtccagaacatgttgtatatgtgaacacctatggcacaaaaagagtgtttaccagctgctattnnnnnnntaat-ttcaaagc |
99 |
Q |
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| T |
11441408 |
aaagttcaactttgatagtccagaacttgttgtgtatgtgaacatcaatggcacaaaaagagtgtgtatcagctgctattaaaaaaaaaaaattcaaagc |
11441507 |
T |
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| Q |
100 |
aagtgaaatcagcatttagataccaacaacaataacaatgaaaaataactcaagcaatcatataaatgatggatcatgacttgcattctttaaataagac |
199 |
Q |
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| T |
11441508 |
tagtgaaatcagcatttagataccaacaacaataacaatgaaaaataactcaagcaatcatataaattatggatcatgacttgcattctttaaataagac |
11441607 |
T |
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| Q |
200 |
tattttattctgaagtttttacctgtattaaatcaacattagggaaagcttggacaaaatcatttataactttagtgcttaaaggcgcggcact |
293 |
Q |
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| T |
11441608 |
tattttattccgaggtttgtacctgtataaaatcaacatgagggaaagcttggacaaaatcatttatagcttttgtggttaaaggcgctgcact |
11441701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 129 - 267
Target Start/End: Original strand, 11452073 - 11452212
Alignment:
| Q |
129 |
caataacaatgaaaaataactcaagcaatcatataaatgatggatcatgacttgcattctttaaataagactattttattctgaagtt-tttacctgtat |
227 |
Q |
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| T |
11452073 |
caatagcaaagaaaaataactcaatcaattatataaatgatggagcatgacttgcattcttcaattaaggttaatttgctccaaggttctttacctgtat |
11452172 |
T |
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| Q |
228 |
taaatcaacattagggaaagcttggacaaaatcatttata |
267 |
Q |
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| T |
11452173 |
aaaatcaacattagggaaagcttggacaaaatcttttata |
11452212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11451925 - 11452001
Alignment:
| Q |
1 |
aaagttcaactttgatagtccagaacatgttgtatatgtgaacacctatggcacaaaaagagtgtttaccagctgct |
77 |
Q |
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||||||||||| | || |||||||||||| |||| |||| || ||| |||||||| ||| ||| |||| |||||||| |
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| T |
11451925 |
aaagttcaactattatggtccagaacatgctgtaaatgttaataccaatggcacataaatagtatttatcagctgct |
11452001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 29912706 - 29912585
Alignment:
| Q |
145 |
taactcaagcaatcatataaatgatggatcatgacttgcattctttaaat-------aagactattttattctgaagtt-tttacctgtattaaatcaac |
236 |
Q |
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| T |
29912706 |
taactcaagcaatcatataaacgatggagcattacttgcattctctaattaagagtcaagactattctattcaaaggttctttacctgtataaaatcaac |
29912607 |
T |
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| Q |
237 |
attagggaaagcttggacaaaa |
258 |
Q |
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| T |
29912606 |
gttagggaaagcatggacaaaa |
29912585 |
T |
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