View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_high_13 (Length: 304)
Name: NF15055_high_13
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 72 - 292
Target Start/End: Complemental strand, 18187394 - 18187174
Alignment:
| Q |
72 |
ggaggtacaatggtttatgtgtttatgtgaagaggttttataaaggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtgagc |
171 |
Q |
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| T |
18187394 |
ggaggtacaatggtttatgtgtttatgtgaagaggttttatataggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtgagc |
18187295 |
T |
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| Q |
172 |
cacaaattgttttggcctatgagattttagtgttcagctggattcactcacacgtatgaaaaatgtgctgttctattctcttttcacccatccttttcaa |
271 |
Q |
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| T |
18187294 |
cacaaattgttttggcctatgagatcttagtgttcagctggattcactcacacgtatgaaaaatgtgctgttctattctcttttcacctatccttttcaa |
18187195 |
T |
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| Q |
272 |
cttttgcctttttgtcaattc |
292 |
Q |
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||||||||||||||||||||| |
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| T |
18187194 |
cttttgcctttttgtcaattc |
18187174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 18196939 - 18196796
Alignment:
| Q |
72 |
ggaggtacaatggtttatgtgtttatgtgaagaggttttataaaggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtgagc |
171 |
Q |
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| T |
18196939 |
ggaggtacaatggtttatgtgtttctgtgaagaagttttataaaggtcaaaaagtt---ggaaagcaatgccacatcagaaaagtggaagttttgtgagc |
18196843 |
T |
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| Q |
172 |
cacaaattgttttggcctatgagattttagtgttcagctggattcac |
218 |
Q |
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| T |
18196842 |
cacaaatttttgtggcctgtgagatcttagtgtgcagatggattcac |
18196796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 18192405 - 18192263
Alignment:
| Q |
72 |
ggaggtacaatggtttatgtgtttatgtgaagaggttttataaaggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtgagc |
171 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||||||||||| | ||||||||||||| |
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| T |
18192405 |
ggaggtactatggtttatgtgtttatgtgaagaagttttataaaggtcaaaaagtt---ggaaagcaatgccacatcagaaaagtggaagttttgtgagc |
18192309 |
T |
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| Q |
172 |
cacaaattgttttggcctatgagattttagtgttcagctggattcac |
218 |
Q |
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| T |
18192308 |
cacaaattgctgtgg-ctgtgagatcttagtgtgcagctggattcac |
18192263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 18229028 - 18228911
Alignment:
| Q |
72 |
ggaggtacaatggtttatgtgtttatgtgaaga---ggttttataaaggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtg |
168 |
Q |
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|||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
18229028 |
ggaggtacaatggttt--gtgtttatgtgaagaagaggtttcataaaggtcaaaaagttagaa--------agccacatacgaaaagggaaagttttgtg |
18228939 |
T |
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| Q |
169 |
agccacaaattgttttggcctatgagatt |
197 |
Q |
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| T |
18228938 |
agccacaaatt-ttttggcctatgagatt |
18228911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18187466 - 18187429
Alignment:
| Q |
1 |
ttttgttgttgtttctttgttcttgttacttgataatg |
38 |
Q |
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| T |
18187466 |
ttttgttgttgtttctttgttcaggttacttgataatg |
18187429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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