View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_high_14 (Length: 276)
Name: NF15055_high_14
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 20531136 - 20531384
Alignment:
| Q |
10 |
aagaatatcctctgagttgcagttcaatgactcctgagttaattctgtgagttttaggttcaccggtttgaattcaaacccgattcctaaactcttagct |
109 |
Q |
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| T |
20531136 |
aagaatatcctctgagttgcagttcaatgactcccgagttaattctgtgagttttaggttcaccggtttgaattcaaacccgattcctaaactcttagct |
20531235 |
T |
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| Q |
110 |
tctcgaaccaaaagttctccgatggttttcaggttctcgttgtcaatgttcactgtcacagtcgtgatcttcaacattgctggtgatccattgagacgtg |
209 |
Q |
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| T |
20531236 |
tctcgaaccaaaagttctccgatggttttcaggttctcgttgtcaatgttcactgtcacagtcgtgatcttcaacattgctggtgatccgttgagacgtg |
20531335 |
T |
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| Q |
210 |
catggagctcttggagaagattgatatattgttttccattaccgatatc |
258 |
Q |
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| T |
20531336 |
catggagctcttggagaagattgatatattgttttccattaccgatatc |
20531384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 28296504 - 28296735
Alignment:
| Q |
11 |
agaatatcctctgagttgcagttcaatgactcctgagttaattctgtgagttttaggttcaccggtttgaattcaaacccgattcctaaactcttagctt |
110 |
Q |
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| T |
28296504 |
agaatatcctctgagtcacaattcagtgactcgcgggttaatttcgtgagttttatgttcaccggtttgaattcaaacccgattcctaaactctcagctt |
28296603 |
T |
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| Q |
111 |
ctcgaaccaaaagttctccgatggttttcaggttctcgttgtcaatgttcactgtcacagtcgtgatcttcaacattgctggtgatccattgagacgtgc |
210 |
Q |
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| T |
28296604 |
ctcgacgcaaaagttctccgttggttttcag---------------attcatcgtcacagtcgtgatcttcaacattgctagttaaccattgagacgtgc |
28296688 |
T |
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| Q |
211 |
atggagctcttggagaagattgatatattgttttccattaccgatat |
257 |
Q |
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| T |
28296689 |
atggagtttttggagaaggtttatgtattgttttccattaccaatat |
28296735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 258
Target Start/End: Complemental strand, 28296211 - 28296024
Alignment:
| Q |
68 |
ttcaccggtttgaattcaaacccgattcctaaactcttagcttctcgaaccaaaagttctccgatggttttcaggttctcgttgtcaatgttcactgtca |
167 |
Q |
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| T |
28296211 |
ttcaccggtttgaattcaa-cccgattcctaaactc--aacttctcgacccaaaagttctccgatggttttcagattctcgtcgtcgacgttcaccgtca |
28296115 |
T |
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| Q |
168 |
cagtcgtgatcttcaacattgctggtgatccattgagacgtgcatggagctcttggagaagattgatatattgttttccattaccgatatc |
258 |
Q |
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| T |
28296114 |
aagtcgtgatctttaacattgctagttaaccgttgagacgcacatggaatttttggagaaggtttatgtattattttccattaccaatatc |
28296024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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