View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_high_2 (Length: 648)
Name: NF15055_high_2
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 15 - 629
Target Start/End: Complemental strand, 1493337 - 1492718
Alignment:
| Q |
15 |
atgaatccaacaatggcagcatgagataggaagtcaatcaagaaaccaagcctgcaaaatgaagaaaaaggaattagtcaaagcatacacaagacaagaa |
114 |
Q |
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| T |
1493337 |
atgaatccaacaatggcagcatgagataggaagtcaatcaagaaaccaagcctgcaaaatgaagaaaaaggaattagtcaaagcatacacaagacaagaa |
1493238 |
T |
|
| Q |
115 |
ccatgcatttatagtagtac----tgtagtttaccttaaaactccaagtgccatttgaacgacccctgcaaagaaagtggaagtaaaagcaagagcaagg |
210 |
Q |
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| T |
1493237 |
ccatgcatttatagtagtacgtactgtagtttaccttaaaactccaagtgccatttgaacgactcctgcaaagaaagtggaagtaaaagcaagagcaagg |
1493138 |
T |
|
| Q |
211 |
tattcaggacttttgaagtcactgatctcctctgaaagcagacttccaagcaagagagacaccacagctactggtcctatggcaatatctcttgaacttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1493137 |
tattcaggacttttgaagtcactgatctcctctgaaagcagacttccaagcaagagagacaccacagctactggtcctatggcaatatctcttgaacttc |
1493038 |
T |
|
| Q |
311 |
ccatgaaagcatacacaagaggagcaacaaaacttgtatctgcaaaaccaa-ctcgtcgtcaatattaactgaagaaggtatataatctgaactacataa |
409 |
Q |
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| T |
1493037 |
ccatgaaagcatacacaagaggagcaacaaaacttgtatctgcaaaaccaaactcgtcgtcaatattaactgaagaaggtatataatctgaactacataa |
1492938 |
T |
|
| Q |
410 |
tatatcaaagttgcttacatagtgcatactgaggttccaaatttgcaagctttgcatatgcaatatcctgtttatgcattcacatttacacaaatgtcta |
509 |
Q |
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| T |
1492937 |
tatatcaaagttgcttacatagtgcatactgaggttccaaatttgcaagctttgcatatgcaatatcctgtttatgcattcacatttacacaaacgtcta |
1492838 |
T |
|
| Q |
510 |
atcagatttctatgtatcgacatgccataatatttacacaaatagattttactttgagacatttgtacaaataaatatacctgaggaatgcaaagacttg |
609 |
Q |
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| T |
1492837 |
atcagatttctatgtatcgacatgccataatatttacacaaatagattttactttgagacatttgtacaaataaatatacctgaggaatgcaaagacttg |
1492738 |
T |
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| Q |
610 |
caatggtgagtccagcaatc |
629 |
Q |
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| T |
1492737 |
caatggtgagtccagaaatc |
1492718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 628
Target Start/End: Complemental strand, 33297972 - 33297931
Alignment:
| Q |
587 |
tacctgaggaatgcaaagacttgcaatggtgagtccagcaat |
628 |
Q |
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| T |
33297972 |
tacctgaggtatgcaaagacttgcaatagtgagaccagcaat |
33297931 |
T |
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