View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15055_high_21 (Length: 226)

Name: NF15055_high_21
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15055_high_21
NF15055_high_21
[»] chr3 (10 HSPs)
chr3 (1-220)||(2760419-2760639)
chr3 (1-219)||(2819766-2819985)
chr3 (1-180)||(2808512-2808692)
chr3 (27-183)||(2837342-2837499)
chr3 (27-183)||(2854552-2854709)
chr3 (1-220)||(2750200-2750420)
chr3 (1-182)||(5414129-5414310)
chr3 (3-180)||(2770308-2770486)
chr3 (3-220)||(2791519-2791737)
chr3 (3-220)||(2798566-2798784)
[»] scaffold0691 (1 HSPs)
scaffold0691 (2-219)||(4866-5084)
[»] chr1 (1 HSPs)
chr1 (38-147)||(11116503-11116612)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2760639 - 2760419
Alignment:
Q  1 tctcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2760639 tctcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtactctttaggtttaa 2760540  T
Q  101 gtaccttaagtgaaaaagattccccaaatttttaggaatatgattc-acaatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2760539 gtaccttaagtgaaaaagattccccaaatttttaggaatatgattcaacgatgtaccttcaatgtcaagtaccttcaaaatcctagatttcgaacacagt 2760440  T
Q  200 ttgcccacgaaatgctccaat 220  Q
    |||||||||||||||||||||    
T  2760439 ttgcccacgaaatgctccaat 2760419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2819985 - 2819766
Alignment:
Q  1 tctcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaa 100  Q
    ||||| |||||||||||||| ||||||| | | |||||||||||||||| |||||||| |||||||||||| | | ||||||||||||||||||||||||    
T  2819985 tctcacgcacaagtgtgtatcttatatcgagtgtctctaagttctgtagttcaccaacagatttaggaagagcatgtatttttgtattctttaggtttaa 2819886  T
Q  101 gtaccttaagtgaaaaagattccccaaatttttaggaatatgattc-acaatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagt 199  Q
    |||||||||||| |||||| |||||||||||||||| | ||||||| |  ||||||||| |||||||||||||||||||||||  || || |||| ||||    
T  2819885 gtaccttaagtggaaaagactccccaaatttttaggtacatgattcaatgatgtaccttgaatgtcaagtaccttcaaaatccgagactttgaacccagt 2819786  T
Q  200 ttgcccacgaaatgctccaa 219  Q
    ||||||||||||||||||||    
T  2819785 ttgcccacgaaatgctccaa 2819766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 2808692 - 2808512
Alignment:
Q  1 tctcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaa 100  Q
    ||||| ||||||||||||   ||| ||||||| ||||||||||||| || |||||||| |||||||||||| ||| ||||||||||||| ||||||||||    
T  2808692 tctcacgcacaagtgtgtcccttaaatccaatgtctctaagttctgcagttcaccaacagatttaggaagagcctgtatttttgtattccttaggtttaa 2808593  T
Q  101 gtaccttaagtgaaaaagattccccaaatttttaggaatatgattc-acaatgtaccttcaatgtcaagtaccttcaaaat 180  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |  ||||||||| |||||||| ||||||||||||    
T  2808592 gtaccttaagtgaaaaagattccccaaatttttaggaatatgatgcaaggatgtaccttgaatgtcaaataccttcaaaat 2808512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 2837342 - 2837499
Alignment:
Q  27 tccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaagtaccttaagtgaaaaagattcccca 126  Q
    |||||| |||||||||||||||  |||||||  ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2837342 tccaatgtctctaagttctgtaattcaccaatagatttaggaagaacctttacttttgtattccttaggtttaagtaccttaagtgaaaaagattcccca 2837441  T
Q  127 aatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcct 183  Q
    ||||||||||||||||||||| | | ||||| | |||||||||||||||||| |||||    
T  2837442 aatttttaggaatatgattcaaagacgtaccctgaatgtcaagtaccttcaatatcct 2837499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 2854552 - 2854709
Alignment:
Q  27 tccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaagtaccttaagtgaaaaagattcccca 126  Q
    |||||| |||||||||||||||| |||||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |    
T  2854552 tccaatgtctctaagttctgtagttcaccaatagatttaggaagaacctttacttttgtattccttaggtttaagtaccttaagtgaaaaagattcccaa 2854651  T
Q  127 aatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcct 183  Q
    |||| |||||||||| ||||| | | ||||||| |||||||||||||||||| |||||    
T  2854652 aattattaggaatataattcaaagacgtaccttgaatgtcaagtaccttcaatatcct 2854709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2750420 - 2750200
Alignment:
Q  1 tctcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaa 100  Q
    |||||||||| ||||| | | ||| ||||||| |||||||||| |||| ||||||||  |||||||||||| ||||||  ||||||||| ||||||| |     
T  2750420 tctcatgcactagtgtttctcttaaatccaatgtctctaagttatgtaactcaccaatagatttaggaagagcctttacatttgtattccttaggttaat 2750321  T
Q  101 gtaccttaagtgaaaaagattccccaaatttttaggaatatgattc-acaatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagt 199  Q
    |||||  ||||||||||||||||||||||||||||| ||||||||| || | || |||| ||||||||| ||||||||||| || || | |||||| | |    
T  2750320 gtaccgcaagtgaaaaagattccccaaatttttagggatatgattcaacgacgtcccttgaatgtcaaggaccttcaaaattcttgactgcgaacaaact 2750221  T
Q  200 ttgcccacgaaatgctccaat 220  Q
    || |||| |||||||||||||    
T  2750220 ttacccatgaaatgctccaat 2750200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 5414310 - 5414129
Alignment:
Q  1 tctcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaa 100  Q
    |||||||||||||||| | | ||| ||||||| |||||||||| |  ||||||| | | ||||||||||||||||||| ||| |||||| ||||||| |     
T  5414310 tctcatgcacaagtgtttctcttaaatccaatgtctctaagttatacagctcacta-cagatttaggaagaacctttactttcgtattccttaggttaat 5414212  T
Q  101 gtaccttaagtgaaaaagattccccaaatttttaggaatatgattc-acaatgtaccttcaatgtcaagtaccttcaaaatcc 182  Q
    |||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||| ||||||| |||||    
T  5414211 gtacctcaagtgaaaaagattccccaagtttttagggatatgattcaacaatgtaccttgaatgtcaagaaccttcagaatcc 5414129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 2770486 - 2770308
Alignment:
Q  3 tcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaagt 102  Q
    |||||||||||||| | | ||| ||| ||| ||||||| |||| |||||||||||| ||||||||||||  || ||  || ||||   ||||||||| ||    
T  2770486 tcatgcacaagtgtttctcttaaatctaatgtctctaaattctttagctcaccaacagatttaggaagagtctgtacattagtataacttaggtttatgt 2770387  T
Q  103 accttaagtgaaaaagattccccaaatttttaggaatatgattc-acaatgtaccttcaatgtcaagtaccttcaaaat 180  Q
    ||||||||||||||||| | |||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||    
T  2770386 accttaagtgaaaaagacttcccaaatttttaggaatatgattcaacgatgtaccttgaatgtcaagtaccttcaaaat 2770308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 2791737 - 2791519
Alignment:
Q  3 tcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaagt 102  Q
    |||||||||||||| | | ||| ||| ||| ||||||| ||||||||||||||||| ||||||||||||   | ||  || ||||   ||||||||| ||    
T  2791737 tcatgcacaagtgtttctcttaaatctaatgtctctaaattctgtagctcaccaacagatttaggaagagtttgtacattagtatagcttaggtttatgt 2791638  T
Q  103 accttaagtgaaaaagattccccaaatttttaggaatatgattc-acaatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagttt 201  Q
    |||| |||||||||||| | |||| ||||||||||||||||||| |  ||||||||| ||||||||||||||||||||| || || | ||||||||||||    
T  2791637 acctcaagtgaaaaagacttcccagatttttaggaatatgattcaatgatgtaccttgaatgtcaagtaccttcaaaatgctagactgcgaacacagttt 2791538  T
Q  202 gcccacgaaatgctccaat 220  Q
     ||||  |||| |||||||    
T  2791537 acccatcaaattctccaat 2791519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 2798784 - 2798566
Alignment:
Q  3 tcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaagt 102  Q
    |||||||||||||||| | | | ||||||| |||||||||||||||| |||||||| ||||| ||||||  || ||  || ||||   ||||||||| ||    
T  2798784 tcatgcacaagtgtgtttctcaaatccaatgtctctaagttctgtagttcaccaacagatttcggaagagtctgtacattagtataacttaggtttatgt 2798685  T
Q  103 accttaagtgaaaaagattccccaaatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagttt 201  Q
    |||||| |||| ||||| || ||||||||||||||||||  ||||   ||||||||| ||||||||| |||||||| ||||| || |  |||||||||||    
T  2798684 accttatgtgacaaagactcaccaaatttttaggaatatttttcaatgatgtaccttgaatgtcaagcaccttcaatatcctagactgtgaacacagttt 2798585  T
Q  202 gcccacgaaatgctccaat 220  Q
     ||||  ||||||||||||    
T  2798584 acccatcaaatgctccaat 2798566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 4866 - 5084
Alignment:
Q  2 ctcatgcacaagtgtgtatgttatatccaatatctctaagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaag 101  Q
    ||||||||||||||| | | ||| ||||||  |||||||||| |||||||||||||| |||||||||||| ||| || |||||| |||  |||||||| |    
T  4866 ctcatgcacaagtgtttctcttaaatccaacgtctctaagttttgtagctcaccaacagatttaggaagagcctctacttttgtgttccgtaggtttatg 4965  T
Q  102 taccttaagtgaaaaagattccccaaatttttaggaatatgattc-acaatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtt 200  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| |  ||||||||| |||||||||||||||||||||| | || |  || |||||||    
T  4966 tacctcaagtgaaaaagattccccaaatttttgggaatatgattcaatgatgtaccttgaatgtcaagtaccttcaaaatcttagactgtgagcacagtt 5065  T
Q  201 tgcccacgaaatgctccaa 219  Q
    | |||| ||||||||||||    
T  5066 tacccatgaaatgctccaa 5084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 11116503 - 11116612
Alignment:
Q  38 taagttctgtagctcaccaactgatttaggaagaacctttatttttgtattctttaggtttaagtaccttaagtgaaaaagattccccaaatttttagga 137  Q
    ||||||||||||||||||||| |||||| ||||||||| || ||||| |||| | ||||||| |||| | ||||||||||||||||||||||||| ||||    
T  11116503 taagttctgtagctcaccaacagatttacgaagaacctgtacttttgcattcctcaggtttacgtacttcaagtgaaaaagattccccaaattttcagga 11116602  T
Q  138 atatgattca 147  Q
    ||| ||||||    
T  11116603 atacgattca 11116612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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