View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_high_5 (Length: 466)
Name: NF15055_high_5
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 41920281 - 41919982
Alignment:
| Q |
21 |
caagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtactcggcagttcatttttaacctgt |
120 |
Q |
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| T |
41920281 |
caagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtactcggcagttcatttttaacctgt |
41920182 |
T |
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| Q |
121 |
attcaaaataaatacctaaaatcagtgaccaattaataatataaactcaatccatttcatatatttatttgttatagcattctannnnnnnncttttcaa |
220 |
Q |
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| T |
41920181 |
attcaaaataaatacctaaaatcagtgaccaattaataatataaactcaatccatttcatatatttatttgttatagcattctattttttttcttttcaa |
41920082 |
T |
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| Q |
221 |
atcaatactttaacaacaaaacctgaatcatggttcaactgttttaaaccgcttaaacatgataaagattcaattgaaacatttaaataaccgaacctta |
320 |
Q |
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| T |
41920081 |
atcaatactttaacaacaaaacctgaatcatggttcaactgttttaaaccgcttaaacatgataaagattcaattgaaccatttaaataaccgaacctta |
41919982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 313 - 450
Target Start/End: Complemental strand, 41919952 - 41919815
Alignment:
| Q |
313 |
gaaccttatgattcggttccttttttaaaacatctttaattatgaatattttaaaaatccaagattgaattattgagtttgaaataattatgaaagtgga |
412 |
Q |
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| T |
41919952 |
gaaccatatgattcggttcgttttttaaaacatctttaattatgaatattttaaaaatccaagattgaattattgagtttgaaataattatgaaagtgga |
41919853 |
T |
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| Q |
413 |
ccttcaagtttgacaagtataagaacttccatcctttg |
450 |
Q |
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| T |
41919852 |
ccttcaagtttgacaagtataagaacttccaccctttg |
41919815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 26784337 - 26784428
Alignment:
| Q |
27 |
catttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtactcggcagttcatttttaacct |
118 |
Q |
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| T |
26784337 |
cattttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatctataggcatttaaagtactgggcaattcatttttaacct |
26784428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 26831056 - 26831149
Alignment:
| Q |
25 |
accatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtactcggcagttcatttttaacct |
118 |
Q |
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| T |
26831056 |
accatttttctgaaaagattggctggtccacatgaccatcgatgttgttggtacctaaaggcttttaatgtacttggcaattcgtttttaacct |
26831149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 26817412 - 26817504
Alignment:
| Q |
26 |
ccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtactcggcagttcatttttaacct |
118 |
Q |
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||||||||| || ||||||||||| ||||| ||||| ||||| |||||||| | || ||||| || ||||| |||| |||||||||||||| |
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| T |
26817412 |
ccatttttctaaagagattggctggcccacatgaccatcgatgttgttggtacctataagccttaaatgtacttggcaattcatttttaacct |
26817504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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