View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_low_11 (Length: 380)
Name: NF15055_low_11
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 51 - 380
Target Start/End: Complemental strand, 32382950 - 32382613
Alignment:
| Q |
51 |
ctgatatggtattatattcatttttgtaatttatctgctaaccgtaacatctccacatttgatattctgtttaatgtgctgaattgccgatagcttgttc |
150 |
Q |
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| T |
32382950 |
ctgatatggtattatattcatttttgtaatttatctgctaaccgtaacatctccacatttgatattctgttttatgtgctgaattgccgatagcttgttc |
32382851 |
T |
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| Q |
151 |
ttctagcgtaaacagattaattagattgtgcttcataca-----tgtcttgtgtattaacaacgtgaatagctcaatacaaaagctgcacttggaataat |
245 |
Q |
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| T |
32382850 |
ttctagcgtaaacagattaattagattgtgcttcatatacattctgtcttgtgtattaacaacgtgaatagctcaatacaaaagctgcacttggaataat |
32382751 |
T |
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| Q |
246 |
ttagttaccaaatttttacactatgttgcaattagatatttttgcttgatataaagtttttgtcgcatgaagttttcgaagta-nnnnnnnacctttact |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
32382750 |
ttagttaccaaatttttacactatgttgcaattagatatttttgcttgatataaagtttttgtagcatgaatttttcgaagtattttttttacctttact |
32382651 |
T |
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| Q |
345 |
atgttgaatatgta--tgtgtgtgtatggtttaaattt |
380 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
32382650 |
atgttgaatatgtatgtgtgtgtgtatggtttaaattt |
32382613 |
T |
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