View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_low_12 (Length: 373)
Name: NF15055_low_12
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 23877239 - 23877600
Alignment:
| Q |
1 |
catgagttgtagaagcatgaccagaagctaaacagtatcagtagccacaatgagaaatccaagctagcaagaaagnnnnnnngtgaactttccaaatgaa |
100 |
Q |
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| T |
23877239 |
catgagttgtagaagcatgatcagaagctaaacagtttcagtagccacaatgagaaatccaagctagcaagaaagaaaaaaagtgaactttccaaatgaa |
23877338 |
T |
|
| Q |
101 |
gttgttgaaaatttaaggtgtaaaaattaacaaataatgaaagtttcaagtgaagggaataatacggttgtcaacaactctagaaacaaattaggaaaga |
200 |
Q |
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| T |
23877339 |
gttgttgaaaatttaaggtgtaaatattaacaaataatgaaagtttcaagtgaagggaataatacggttgtcaacaactctagaaacaaattaggaaaga |
23877438 |
T |
|
| Q |
201 |
acttgttttgtagtgaaaaaaggt---agaaacagatgtttc-cagacttatgtcacatgagctggtggtatactattgtggtctcaatgatttaataat |
296 |
Q |
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| T |
23877439 |
acttgttttgtagtgaaaaaaggtagaagaaacagatgtttcacagacttatgtcacatgagctggtggtatactattgtggtctcaatgatttaataat |
23877538 |
T |
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| Q |
297 |
cgtttagtttggcgtttgcaattgaattctagcatcacaatgccacttcaacgtgaacttta |
358 |
Q |
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| T |
23877539 |
cgtttagtttggcatttgcaattgaattctagcatcacaatgccacttcaacatgaatttta |
23877600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 23421815 - 23421453
Alignment:
| Q |
1 |
catgagttgtagaagcatgaccaga----agctaaacagtatcagtagccacaatgagaaatccaagctagcaagaaagnnnnnnn-gtgaactttccaa |
95 |
Q |
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| T |
23421815 |
catgagctgtagaagcatgatcagatgcaagctcaacagtttcagtagccacaacgagaaatccaagctagcaagaaagaaaaaaaagtgaactt-ccaa |
23421717 |
T |
|
| Q |
96 |
atgaagttgttgaaaatttaaggtgtaaaaattaacaaataatgaaagtttcaagtgaagggaataatacggttgtcaacaactctagaaacaaattagg |
195 |
Q |
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|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||| |
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| T |
23421716 |
gtgaagttgttgagaacttaagttgtaaaaattaacaaataatgaaagtttcaagtgaggggaataatacggttggcaacaactctagaaaaaaagaagg |
23421617 |
T |
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| Q |
196 |
aaagaac---ttgttttgtagtgaaaaaaggtagaaaca--gatgtttc-cagactt-atgtcacatgagctggtggtatactattgtggtctcaatgat |
288 |
Q |
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||||||| |||||||| |||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23421616 |
aaagaacaacttgttttgcagtgaaaaaaggtagaaaaatagatgtttgacagactttatgtcacatgagctggtggtatactattgcagtctcaatgat |
23421517 |
T |
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| Q |
289 |
ttaataatcgtttagtttggcgtttgcaattgaattctagcatcacaatgccacttcaacgtga |
352 |
Q |
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| T |
23421516 |
ttaataattgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaacgtga |
23421453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 23877601 - 23877687
Alignment:
| Q |
275 |
gtggtctcaatgatttaataatcgtttagtttggcgtttgcaattgaattctagcatcacaatgccacttcaacgtgaactttatga |
361 |
Q |
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| T |
23877601 |
gtggtctcaatgatttaataatcgtttagtttggcatttgcaattgaattctagcgtcacaatgccactttaacgtgaattttatga |
23877687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 37943270 - 37943374
Alignment:
| Q |
97 |
tgaagttgttgaaaatttaaggtgtaaaaattaacaaataatgaaagtttcaagtgaagggaataatacggttgtcaacaactctagaaacaaattagga |
196 |
Q |
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|||||||||||| || |||||||||| | |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| || ||| |||| |
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| T |
37943270 |
tgaagttgttgagaacttaaggtgtagagattaacaaataaagaaagtttcaagtgaagggaataatatggttggcaacaactctaggaaaaaagaagga |
37943369 |
T |
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| Q |
197 |
aagaa |
201 |
Q |
| |
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||||| |
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| T |
37943370 |
aagaa |
37943374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 37943416 - 37943457
Alignment:
| Q |
250 |
tcacatgagctggtggtatactattgtggtctcaatgattta |
291 |
Q |
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| T |
37943416 |
tcacatgagctggtggtatactattgtggactcaatgattta |
37943457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37943170 - 37943248
Alignment:
| Q |
1 |
catgagttgtagaagcatgaccag----aagctaaacagtatcagtagccacaatgagaaatccaagctagcaagaaag |
75 |
Q |
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||||||| |||||||||||| ||| ||||| |||||| |||||||||| |||||||||| ||||||| ||||||| |
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| T |
37943170 |
catgagtagtagaagcatgatcagatgcaagctcaacagtttcagtagccatgatgagaaatcgaagctaggaagaaag |
37943248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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