View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_low_13 (Length: 349)
Name: NF15055_low_13
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 2487664 - 2487334
Alignment:
| Q |
1 |
tgctgctgctccagaagcctgatgatccatcatctttagtcacggtttggccttgaattatttctcccttacatccctcatccattgaaacagtagctcg |
100 |
Q |
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| T |
2487664 |
tgctgctgctccagaagcctgatgatccatcatctttagtcacggtttggccttgaattatttctcccttacatccctcatccattgaaacagtagcttg |
2487565 |
T |
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| Q |
101 |
aggtttttcgcggcttctaagacaacctatgctctatcnnnnnnnncatgttcaacaaaaagtgtgactaagaatcatacaatcatgttacaatcacgnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487564 |
aggtttttcgcggcttctaagacaacctatgctctatcaaaaaa--catgttcaacaaaaagtgtgactaagaatcatacaatcatgttacaatcacgaa |
2487467 |
T |
|
| Q |
201 |
nnnnnctatgcattcaactactattatttgtaacaataaatttaatgcaaatagaattgacataaaacaagtttcactctcacagagaaaatttctttgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487466 |
aaaaactatgcattcaactactattatttgtaacaataaatttaatgcaaatagaattgacataaaacaagtttcactctcacagagaaaatttctttgc |
2487367 |
T |
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| Q |
301 |
atttatgcttgaatttttccatggagataatga |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2487366 |
atttatgcttgaatttttccatggagataatga |
2487334 |
T |
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