View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_low_14 (Length: 347)
Name: NF15055_low_14
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_low_14 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 339
Target Start/End: Original strand, 33320201 - 33320517
Alignment:
| Q |
21 |
gataacatatacaataattgagattgataaaagagagaattgaaatacgaaaatggttgtttattgtaagactgaaaagatttacataagatactagatc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33320201 |
gataacatatacaataattgagattgataaaagagagatttgaaatacgaaaatggttgtttattgtaggactgaaaagatttacataagatactagatc |
33320300 |
T |
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| Q |
121 |
cattgtcagaacaaggctcctgcggaaggcttagtagctctccttctaataataaaggcaacaacacta-gcatcggaatcatatatatagtttccaact |
219 |
Q |
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|| || |||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||||| | ||| | ||||||||||||||||||| |
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| T |
33320301 |
cactgccagaacaaggcttctgcggagggcttagtagctctccttccaatgataaaggcaacaacactaggaatcatatatatatatatagtttccaact |
33320400 |
T |
|
| Q |
220 |
atttatttcttcgactgtaaagatttaacataaaagaccaccaaaatcacctcttcgaaaataaatcaaaagttgccctagtaacacatccaatacaata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||| |
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| T |
33320401 |
atttatttcttcgactgtaaagatttaacataaaagaccaccaaaatcacctcttcaaaaataaatcaaaagttgcaccagtaacacatccaataaaat- |
33320499 |
T |
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| Q |
320 |
aataaatttaaagtataatc |
339 |
Q |
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| T |
33320500 |
--taaatttaaagtataatc |
33320517 |
T |
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Target: scaffold0697 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 3502 - 3587
Alignment:
| Q |
254 |
agaccaccaaaatcacctcttcgaaaataaatcaaaagttgccctagtaacacatccaatacaataaataaatttaaagtataatc |
339 |
Q |
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| T |
3502 |
agaccagcaaaatcactttttcaaaaataaatcaaaagttgcactagtaacatatccaatagagtaaataaatttaaagtataatc |
3587 |
T |
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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 21532544 - 21532629
Alignment:
| Q |
254 |
agaccaccaaaatcacctcttcgaaaataaatcaaaagttgccctagtaacacatccaatacaataaataaatttaaagtataatc |
339 |
Q |
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| T |
21532544 |
agaccagcaaaatcactttttcaaaaataaatcaaaagttgcactagtaacatatccaatagagtaaataaatttaaagtataatc |
21532629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 22905498 - 22905436
Alignment:
| Q |
277 |
aaaataaatcaaaagttgccctagtaacacatccaatacaataaataaatttaaagtataatc |
339 |
Q |
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||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
22905498 |
aaaataaatcaaaagttgcactagtaacatatccaatatagtaaataaatttaaagtataatc |
22905436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 10641452 - 10641367
Alignment:
| Q |
254 |
agaccaccaaaatcacctcttcgaaaataaatcaaaagttgccctagtaacacatccaatacaataaataaatttaaagtataatc |
339 |
Q |
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|||||| ||||||||| | ||| ||||||||||||||||||| || |||||| |||||||| | |||||||||||||||||||||| |
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| T |
10641452 |
agaccaacaaaatcactttttcaaaaataaatcaaaagttgcacttgtaacatatccaatagagtaaataaatttaaagtataatc |
10641367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 32714155 - 32714240
Alignment:
| Q |
254 |
agaccaccaaaatcacctcttcgaaaataaatcaaaagttgccctagtaacacatccaatacaataaataaatttaaagtataatc |
339 |
Q |
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|||||| ||||||||| | ||| ||||||||||||||||||| || |||||| |||||||| | |||||||||||||||||||||| |
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| T |
32714155 |
agaccaacaaaatcactttttcaaaaataaatcaaaagttgcacttgtaacatatccaatagagtaaataaatttaaagtataatc |
32714240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 26665246 - 26665168
Alignment:
| Q |
261 |
caaaatcacctcttcgaaaataaatcaaaagttgccctagtaacacatccaatacaataaataaatttaaagtataatc |
339 |
Q |
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||||||||| | ||| ||||||||||||||||||| ||||||||| |||||||| | ||||||||||| |||||||||| |
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| T |
26665246 |
caaaatcactttttcaaaaataaatcaaaagttgcactagtaacatatccaatagagtaaataaattttaagtataatc |
26665168 |
T |
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