View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_low_19 (Length: 256)
Name: NF15055_low_19
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 6819909 - 6819683
Alignment:
| Q |
19 |
aaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaactcctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttc |
118 |
Q |
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| T |
6819909 |
aaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaactcctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttc |
6819810 |
T |
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| Q |
119 |
atggtcaccaacagaacaaagatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtg |
218 |
Q |
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| T |
6819809 |
atggtcaccaacagaacaaagatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtg |
6819710 |
T |
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| Q |
219 |
tcattgactaaacttctatatgttcat |
245 |
Q |
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| T |
6819709 |
tcattgactaaacttctatatgttcat |
6819683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 6834373 - 6834180
Alignment:
| Q |
31 |
atcctcatttcgtatcgaaatttcgaaggcgaaactcctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcaccaac |
130 |
Q |
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| T |
6834373 |
atcctcatttcatatcgaaattttgaaggcgagactcctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcacgaac |
6834274 |
T |
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| Q |
131 |
agaacaaagatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattg |
224 |
Q |
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| T |
6834273 |
agaacaaagatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattg |
6834180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 27 - 245
Target Start/End: Complemental strand, 6813345 - 6813127
Alignment:
| Q |
27 |
tcctatcctcatttcgtatcgaaatttcgaaggcgaaactcctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcac |
126 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||| ||| |
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| T |
6813345 |
tcctatcctcatttcctgtcgaaatttcgaaggcgaaactcctcttttcttggcagctgtatatggcaaaagagaggcattcttttgtcttcatagtcgt |
6813246 |
T |
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| Q |
127 |
caacagaacaaagatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattgac |
226 |
Q |
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|| ||| ||||||||||| | ||| |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813245 |
catcaggacaaagatgattattcagtttcaagaaaaaataatggggacactattcttcattctaccatatccagtgaatactttggttagtgtcattgac |
6813146 |
T |
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| Q |
227 |
taaacttctatatgttcat |
245 |
Q |
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||||||| ||||||||||| |
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| T |
6813145 |
taaacttatatatgttcat |
6813127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 34778905 - 34778826
Alignment:
| Q |
110 |
tttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaat--caaaaacaatggagacactattcttcatt |
187 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
34778905 |
tttgtcttcatggtcaccaacagaataaagatgatgattcactttcaataaaaaaaacaatggagacaccattcttcatt |
34778826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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