View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_low_22 (Length: 237)
Name: NF15055_low_22
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 40539215 - 40539420
Alignment:
| Q |
19 |
caattgactatgttaacatgtgtcacacggacattatagatggaaaactcatgcacccttcactacactattattagtctagtaacaaccattttgcaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40539215 |
caattgactatgttaacatgtgtcacacggacattatagatggaaaactcatgcacccttcactacactattattagtctagtaacaaccattttgcaaa |
40539314 |
T |
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| Q |
119 |
cgactaagttctagtttcctatgcctatttactcttgcaatgaaatcttcagcccttctactcaattcatcagaacaagaagcaaccgaattactttgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
40539315 |
cgactaagttctagtttcctatgcctatttactcttgcaatgaaatcttcagcccttctactcaattcatcagaacgaaaagcaaccgaattactttgtt |
40539414 |
T |
|
| Q |
219 |
catctc |
224 |
Q |
| |
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|||||| |
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| T |
40539415 |
catctc |
40539420 |
T |
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