View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_low_4 (Length: 504)
Name: NF15055_low_4
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 209 - 462
Target Start/End: Complemental strand, 52229882 - 52229629
Alignment:
| Q |
209 |
cgaaccaattatagcaagatttgaatccaacagtaaaaatgaagatacaaaatcatgaattaagaagaagaaaaacaagatctcaaaagagtgagaagga |
308 |
Q |
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| T |
52229882 |
cgaaccaattatagcaagatttgaatccaacagtaaaaatgaagatacaaaatcatgaattaagaagaagaaaaacaagatctcaaaagagtgagaagga |
52229783 |
T |
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| Q |
309 |
agtaaaagtaccttgcgataagtggtgccatcttcttcaacagtccaaccagcttcagcacaaagagctttcaagacctcattgttatcacagtgttttg |
408 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52229782 |
agtaaaattaccctgcgataagtggtgccatcttcttcaacagtccaaccagcttcagcacaaagagctttcaagacctcattgttatcacagtgttttg |
52229683 |
T |
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| Q |
409 |
gtaaattataattcccctgagaccttaatcccgcgtaaatctttgccgctatag |
462 |
Q |
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| T |
52229682 |
gtaaattataattcccctgagaccttaatcccgcgtaaatctttgccgctatag |
52229629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 52230074 - 52229969
Alignment:
| Q |
17 |
cagataacactgaaaaaatgaacgaactagtagttgattaattgaggagtctttgattctgaaattaatttgactaaaaaacacagattctgaaatttct |
116 |
Q |
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| T |
52230074 |
cagataacactgaaaaaatgaacgaactagtagttgattaattgaggagtctttgattctgaaattaatttgactaaaaaacacagattctgaaatttct |
52229975 |
T |
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| Q |
117 |
ttgact |
122 |
Q |
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|||||| |
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| T |
52229974 |
ttgact |
52229969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 7394571 - 7394483
Alignment:
| Q |
318 |
accttgcgataagtggtgccatcttcttcaacagtccaaccagcttcagcacaaagagctttcaagacctcattgttatcacagtgttt |
406 |
Q |
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| T |
7394571 |
acctttcgataagtagtaccatcttcttcaacgatccaaccagcttcagaacaaagagctttcaagacttcattattatcacagtgttt |
7394483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 412
Target Start/End: Original strand, 31533365 - 31533460
Alignment:
| Q |
317 |
taccttgcgataagtggtgccatcttcttcaacagtccaaccagcttcagcacaaagagctttcaagacctcattgttatcacagtgttttggtaa |
412 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||| | || |||||||||||||| ||||| ||||| |
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| T |
31533365 |
taccttacgataagtggttccatcaggttcaacagtccaaccagcttcattacaaagagctttaagaacttcattgttatcacaatgtttaggtaa |
31533460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 6733556 - 6733474
Alignment:
| Q |
317 |
taccttgcgataagtggtgccatcttcttcaacagtccaaccagcttcagcacaaagagctttcaagacctcattgttatcac |
399 |
Q |
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|||||||||||| ||||| ||||||||||| || | |||||||||||| |||||||||||||| | |||||| ||||| |||| |
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| T |
6733556 |
taccttgcgataggtggttccatcttcttcgaccgaccaaccagcttctgcacaaagagctttgaggacctcgttgttgtcac |
6733474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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