View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_low_5 (Length: 493)
Name: NF15055_low_5
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_low_5 |
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| [»] scaffold0244 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 46 - 477
Target Start/End: Complemental strand, 2333121 - 2332694
Alignment:
| Q |
46 |
cttcttgggaaattttgatcgacttccagatgttgctagtaacgtgttgttgtatcatgagagataactccaagcaaagaataaataaataaggtagagt |
145 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2333121 |
cttcttgggaaattttgatcgacttccagatgttgctagtaacatgttgt---atcatgagagataactccaagcaaagaataaataaataaggtagagt |
2333025 |
T |
|
| Q |
146 |
ggatcttcttgtggtaaacccctcttcggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaacttatgatca |
245 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2333024 |
ggatcttcttgtggtaaacccctctacggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaactcatgatca |
2332925 |
T |
|
| Q |
246 |
aattaattgtggagggaggaaacccaaattccgaaagggttaaccttaggaaattccaatctacccaatcataagtcttctcaaagtccactataaataa |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332924 |
aattaattgtggagggaggaaacccaaattccgaaagggttaaccttaggaaattccaatctacccaatcataagtcttctcaaagtccactataaataa |
2332825 |
T |
|
| Q |
346 |
taaaaatcatttgttaccttttcttcctgtgcatacagtgagaaatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagct |
445 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
2332824 |
taaaaatcatttgttacctttt-ttcctgcgcatacagtgagaaatctcttgagcaataattgtgttatcagaagtacctctattgggaatgaaagagct |
2332726 |
T |
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| Q |
446 |
gtgaagaggaccaataaaatcatccaagaaag |
477 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2332725 |
gtgaagaggaccaataaaatcatccaagaaag |
2332694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 76 - 467
Target Start/End: Original strand, 1261237 - 1261631
Alignment:
| Q |
76 |
tgttgctagtaacgtgttgttgtatcatgagagataa---ctccaagcaaagaataaataaataaggt-agagtggatcttcttgtggtaaacccctctt |
171 |
Q |
| |
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||||| ||||||| || | ||||||||| |||||||| ||||| |||||||| ||||||||||||| | ||||||||| ||||| ||||||||||||| |
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| T |
1261237 |
tgttgttagtaacttggttttgtatcattagagataatttctccatgcaaagaacaaataaataaggtgatagtggatctccttgtcgtaaacccctctt |
1261336 |
T |
|
| Q |
172 |
cggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaacttatgatcaaattaattgtggagggaggaaaccca |
271 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||| |||||||||||||| || | |||||||||| |
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| T |
1261337 |
tggtttgaaactatcaagtttttcaccattccacttaagagaaagggaagaagatgtaatacaactcatgatcaaattaataatgagagaaggaaaccca |
1261436 |
T |
|
| Q |
272 |
aattccgaaagggttaaccttaggaaattccaatctacccaatcataagtcttctcaaagtccactataaataataaaaatcatttgttaccttttcttc |
371 |
Q |
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||||| |||| |||||||| || |||| ||||||||||| |||||| | ||||||||||||||| |||||| || || | ||| ||||||||| ||| |
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| T |
1261437 |
aattcagaaaaagttaacctaagaaaatcccaatctaccctatcatacgccttctcaaagtccaccttaaatagtagaagacctttcttacctttt-ttc |
1261535 |
T |
|
| Q |
372 |
ctgtgcatacagtgagaaatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaataaaatca |
467 |
Q |
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||||||| || ||| ||| |||||||||||||| | ||||||||||| ||||||||| ||||| |||||||| |||||||| |||||||||||| |
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| T |
1261536 |
ttgtgcatgcaatgaacaatttcttgagcaataatggcgttatcagaagtacctctatttggaataaaagagctttgaagagggccaataaaatca |
1261631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 12670691 - 12670590
Alignment:
| Q |
173 |
ggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaacttatgatcaaattaattgtggagggaggaaacccaa |
272 |
Q |
| |
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||||||||||| | ||||||||||| ||| ||||||| |||||| || |||| | |||| ||||| |||||||||||||| |||| | ||||| ||||| |
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| T |
12670691 |
ggtttgaaactttaaagtttttcacaatttcacttaagagaaagagaggaaaggataatgcaactcatgatcaaattaataatggatgaaggaaccccaa |
12670592 |
T |
|
| Q |
273 |
at |
274 |
Q |
| |
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|| |
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|
| T |
12670591 |
at |
12670590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 82 - 477
Target Start/End: Original strand, 15927 - 16324
Alignment:
| Q |
82 |
tagtaacgtgttgttgtatcatgagagataa---ctccaagcaaagaataaataaataaggt-agagtggatcttcttgtggtaaacccctcttcggttt |
177 |
Q |
| |
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||||||| || | ||||||||| |||||||| ||||| |||||||| ||||||||||||| | ||||||||| ||| | ||||||||||||| ||||| |
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| T |
15927 |
tagtaacttggttttgtatcattagagataatatctccatgcaaagaacaaataaataaggtgatagtggatctccttctcgtaaacccctctttggttt |
16026 |
T |
|
| Q |
178 |
gaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaacttatgatcaaattaattgtggagggaggaaacccaaattcc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||| |||||||||||||| || | ||||||||||||||| |
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| T |
16027 |
gaaactatcaagtttttcaccattccacttaagagaaagggaagaagatgtaatacaactcatgatcaaattaataatgagagaaggaaacccaaattca |
16126 |
T |
|
| Q |
278 |
gaaagggttaaccttaggaaattccaatctacccaatcataagtcttctcaaagtccactataaataataaaaatcatttgttaccttttcttcctgtgc |
377 |
Q |
| |
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||||| ||||||| || |||| ||||||||||| |||||| || |||| |||||||| |||||| || || | ||| |||||||| ||| ||||| |
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| T |
16127 |
gaaagagttaaccaaagaaaatcccaatctaccctatcatacgtattcttcaagtccaccttaaatagtagaagacctttcttaccttt--ttcttgtgc |
16224 |
T |
|
| Q |
378 |
atacagtgagaaatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaag |
477 |
Q |
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|| || ||| ||| ||||||| |||||| ||||||||||| ||||||||| |||| ||| |||| |||||||| |||||||||||||||||||||| |
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| T |
16225 |
atgcaatgaacaatttcttgagtaataatgacgttatcagaagtacctctattcagaataaaatagctttgaagagggccaataaaatcatccaagaaag |
16324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 261 - 477
Target Start/End: Original strand, 556 - 771
Alignment:
| Q |
261 |
gaggaaacccaaattccgaaagggttaaccttaggaaattccaatctacccaatcataagtcttctcaaagtccactataaataataaaaatcatttgtt |
360 |
Q |
| |
|
|||||||||||||||| | ||||||||| || | || |||||||| |||| |||||||| ||||||||||||||| |||| |||||||| ||| | |
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|
| T |
556 |
gaggaaacccaaattcagtaagggttaatctcaataagttccaatccaccctatcataagctttctcaaagtccactttaaacaataaaaaatctttcat |
655 |
T |
|
| Q |
361 |
accttttcttcctgtgcatacagtgagaaatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaat |
460 |
Q |
| |
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||||||| ||| ||||||| |||| |||||||| ||||| || ||||||||||||| |||||||||||||||||||||| | || ||||| ||||| |
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| T |
656 |
acctttt-ttcttgtgcatgtggtgatcgatctcttgtgcaatgatggtgttatcagaagtacctctattaggaatgaaagagttttggagagggccaat |
754 |
T |
|
| Q |
461 |
aaaatcatccaagaaag |
477 |
Q |
| |
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||||||||||||||||| |
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| T |
755 |
aaaatcatccaagaaag |
771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 40644448 - 40644405
Alignment:
| Q |
160 |
taaacccctcttcggtttgaaactatcaagtttttcaccattcca |
204 |
Q |
| |
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||||||||| || ||||||||||| |||||||||||||||||||| |
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|
| T |
40644448 |
taaacccct-ttaggtttgaaactttcaagtttttcaccattcca |
40644405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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