View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15055_low_8 (Length: 436)

Name: NF15055_low_8
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15055_low_8
NF15055_low_8
[»] chr1 (34 HSPs)
chr1 (241-436)||(32804455-32804649)
chr1 (15-168)||(32804291-32804447)
chr1 (114-239)||(32587773-32587899)
chr1 (114-239)||(34813925-34814051)
chr1 (117-247)||(2571374-2571503)
chr1 (146-247)||(37541079-37541181)
chr1 (114-242)||(40061817-40061946)
chr1 (131-222)||(45305878-45305969)
chr1 (114-247)||(29225761-29225895)
chr1 (125-239)||(35946992-35947110)
chr1 (114-225)||(3718837-3718949)
chr1 (114-263)||(39420592-39420746)
chr1 (8-43)||(36618874-36618909)
chr1 (114-247)||(705315-705449)
chr1 (1-43)||(5346994-5347036)
chr1 (114-247)||(10587548-10587681)
chr1 (114-247)||(26583736-26583870)
chr1 (133-234)||(27932812-27932914)
chr1 (114-247)||(29756108-29756242)
chr1 (1-68)||(49166640-49166709)
chr1 (1-71)||(8900830-8900902)
chr1 (1-71)||(11900864-11900936)
chr1 (146-199)||(26606152-26606205)
chr1 (211-247)||(26760382-26760418)
chr1 (114-228)||(17342836-17342951)
chr1 (133-239)||(21304781-21304887)
chr1 (135-222)||(25819338-25819425)
chr1 (161-239)||(28706597-28706676)
chr1 (205-239)||(49494137-49494171)
chr1 (5-43)||(50302433-50302471)
chr1 (147-247)||(50926788-50926889)
chr1 (1-41)||(25395950-25395990)
chr1 (133-236)||(27209944-27210048)
chr1 (161-236)||(36326182-36326258)
[»] chr4 (32 HSPs)
chr4 (158-247)||(4485918-4486007)
chr4 (114-239)||(38160125-38160251)
chr4 (114-247)||(38319919-38320053)
chr4 (1-68)||(38562165-38562234)
chr4 (113-239)||(4727528-4727654)
chr4 (113-239)||(29990446-29990572)
chr4 (114-239)||(49448849-49448975)
chr4 (147-247)||(18872620-18872718)
chr4 (131-236)||(35027474-35027579)
chr4 (178-247)||(5499398-5499464)
chr4 (114-232)||(40020928-40021047)
chr4 (161-247)||(13529917-13530003)
chr4 (114-247)||(47277647-47277781)
chr4 (131-189)||(52677055-52677113)
chr4 (114-239)||(54729457-54729582)
chr4 (131-216)||(38614960-38615045)
chr4 (112-172)||(11583912-11583972)
chr4 (134-224)||(4354476-4354567)
chr4 (115-272)||(46958731-46958887)
chr4 (186-232)||(41594828-41594874)
chr4 (114-239)||(43334996-43335122)
chr4 (134-239)||(48400604-48400710)
chr4 (146-239)||(49401696-49401790)
chr4 (140-236)||(35029069-35029166)
chr4 (114-155)||(51076472-51076513)
chr4 (211-247)||(20964253-20964289)
chr4 (169-209)||(25125074-25125114)
chr4 (211-247)||(28330900-28330936)
chr4 (203-239)||(29550700-29550736)
chr4 (211-247)||(42132921-42132957)
chr4 (211-247)||(49218748-49218784)
chr4 (2-42)||(52378741-52378781)
[»] chr2 (28 HSPs)
chr2 (125-246)||(40710596-40710717)
chr2 (113-234)||(7420856-7420977)
chr2 (114-237)||(44424240-44424362)
chr2 (162-247)||(19264573-19264658)
chr2 (113-236)||(31592557-31592680)
chr2 (130-239)||(43950421-43950531)
chr2 (114-223)||(4794581-4794691)
chr2 (114-239)||(8550615-8550741)
chr2 (146-236)||(25604401-25604490)
chr2 (146-227)||(19515921-19516001)
chr2 (153-220)||(9937066-9937133)
chr2 (114-247)||(6972506-6972639)
chr2 (114-239)||(23684967-23685093)
chr2 (114-237)||(29937890-29938013)
chr2 (161-239)||(43182327-43182406)
chr2 (146-247)||(314467-314569)
chr2 (134-239)||(2048320-2048426)
chr2 (146-247)||(13222108-13222210)
chr2 (186-239)||(12949938-12949991)
chr2 (114-247)||(3199906-3200037)
chr2 (180-239)||(6075551-6075610)
chr2 (113-192)||(26273766-26273845)
chr2 (146-197)||(44024758-44024809)
chr2 (134-239)||(7213503-7213609)
chr2 (203-280)||(14384043-14384121)
chr2 (114-199)||(3487402-3487487)
chr2 (186-247)||(5425937-5426000)
chr2 (129-173)||(11842558-11842602)
[»] chr3 (19 HSPs)
chr3 (138-246)||(53583527-53583635)
chr3 (114-247)||(39329716-39329849)
chr3 (114-247)||(9218153-9218286)
chr3 (134-237)||(41287290-41287394)
chr3 (157-239)||(38524266-38524348)
chr3 (114-247)||(42547072-42547205)
chr3 (127-219)||(31650932-31651024)
chr3 (146-239)||(9017841-9017935)
chr3 (1-71)||(19790759-19790831)
chr3 (1-71)||(29212875-29212947)
chr3 (114-189)||(27668351-27668426)
chr3 (114-232)||(30261482-30261601)
chr3 (134-226)||(32977776-32977869)
chr3 (114-242)||(3862141-3862271)
chr3 (146-236)||(54021434-54021525)
chr3 (114-235)||(1334758-1334880)
chr3 (114-239)||(39866526-39866652)
chr3 (146-239)||(54122197-54122291)
chr3 (1-29)||(35239685-35239713)
[»] chr8 (31 HSPs)
chr8 (114-247)||(2195476-2195609)
chr8 (114-239)||(42412356-42412482)
chr8 (114-247)||(14689968-14690102)
chr8 (146-247)||(2797080-2797181)
chr8 (1-45)||(429830-429874)
chr8 (114-247)||(10728886-10729021)
chr8 (113-239)||(27868298-27868425)
chr8 (1-68)||(24185571-24185640)
chr8 (114-247)||(33743784-33743918)
chr8 (1-71)||(14113249-14113321)
chr8 (114-247)||(14748669-14748805)
chr8 (1-42)||(42158448-42158489)
chr8 (203-247)||(32231351-32231395)
chr8 (114-197)||(7258383-7258466)
chr8 (1-69)||(8168945-8169015)
chr8 (177-236)||(36011970-36012029)
chr8 (114-239)||(5392057-5392183)
chr8 (114-239)||(15559103-15559229)
chr8 (157-234)||(26570130-26570208)
chr8 (146-247)||(45420904-45421006)
chr8 (114-199)||(8418316-8418401)
chr8 (114-183)||(32679043-32679112)
chr8 (1-71)||(40737855-40737926)
chr8 (1-71)||(44329189-44329261)
chr8 (113-189)||(18725916-18725992)
chr8 (113-181)||(18733392-18733460)
chr8 (1-45)||(20694451-20694495)
chr8 (211-239)||(26677180-26677208)
chr8 (114-237)||(29451357-29451478)
chr8 (154-239)||(38201363-38201450)
chr8 (203-239)||(43844857-43844893)
[»] chr7 (31 HSPs)
chr7 (146-247)||(8149999-8150100)
chr7 (133-235)||(43007921-43008024)
chr7 (114-239)||(2849263-2849389)
chr7 (157-247)||(6697132-6697222)
chr7 (1-71)||(15996152-15996224)
chr7 (146-247)||(40023693-40023794)
chr7 (114-239)||(36070113-36070239)
chr7 (114-239)||(2842025-2842151)
chr7 (114-236)||(3667854-3667976)
chr7 (157-247)||(33774009-33774099)
chr7 (114-236)||(34064223-34064345)
chr7 (203-247)||(32971983-32972027)
chr7 (3-71)||(14574994-14575064)
chr7 (114-233)||(28333179-28333298)
chr7 (161-247)||(9658893-9658979)
chr7 (146-247)||(29996994-29997096)
chr7 (140-277)||(32346552-32346690)
chr7 (114-246)||(10355701-10355834)
chr7 (1-71)||(12810341-12810412)
chr7 (113-247)||(37496361-37496497)
chr7 (203-247)||(21446534-21446578)
chr7 (127-231)||(39171159-39171263)
chr7 (203-247)||(47238315-47238359)
chr7 (133-247)||(32776010-32776125)
chr7 (146-247)||(23111054-23111156)
chr7 (146-239)||(5724681-5724774)
chr7 (1-71)||(23097533-23097605)
chr7 (1-42)||(34670420-34670461)
chr7 (1-71)||(40992767-40992839)
chr7 (1-29)||(26982796-26982824)
chr7 (115-167)||(46095466-46095518)
[»] chr6 (15 HSPs)
chr6 (114-247)||(15371829-15371962)
chr6 (114-239)||(28539004-28539129)
chr6 (114-239)||(7739491-7739617)
chr6 (146-236)||(3166084-3166175)
chr6 (133-247)||(15355602-15355716)
chr6 (11-71)||(24252928-24252985)
chr6 (1-68)||(26296248-26296317)
chr6 (143-232)||(20383882-20383971)
chr6 (118-247)||(31075890-31076019)
chr6 (11-68)||(16260662-16260721)
chr6 (1-44)||(8051043-8051086)
chr6 (114-247)||(15321191-15321324)
chr6 (114-247)||(15325155-15325288)
chr6 (114-247)||(15351349-15351482)
chr6 (134-247)||(34803670-34803786)
[»] chr5 (23 HSPs)
chr5 (114-239)||(25344714-25344838)
chr5 (114-239)||(6172954-6173080)
chr5 (127-236)||(32659837-32659946)
chr5 (114-244)||(14184018-14184148)
chr5 (133-247)||(31196346-31196461)
chr5 (114-247)||(31090312-31090446)
chr5 (113-247)||(35988641-35988775)
chr5 (131-247)||(6629362-6629476)
chr5 (162-236)||(35968776-35968851)
chr5 (114-239)||(11099451-11099577)
chr5 (157-239)||(18319968-18320050)
chr5 (203-247)||(15564859-15564903)
chr5 (1-69)||(14509859-14509929)
chr5 (146-247)||(5147462-5147564)
chr5 (113-222)||(25111139-25111249)
chr5 (113-222)||(25170230-25170340)
chr5 (1-68)||(32522560-32522629)
chr5 (186-247)||(4438018-4438079)
chr5 (114-174)||(858343-858403)
chr5 (187-235)||(8941341-8941389)
chr5 (212-263)||(16883879-16883931)
chr5 (1-29)||(20269522-20269550)
chr5 (1-45)||(30046371-30046415)
[»] scaffold0262 (1 HSPs)
scaffold0262 (146-247)||(12401-12503)
[»] scaffold0576 (1 HSPs)
scaffold0576 (133-247)||(592-706)
[»] scaffold0685 (1 HSPs)
scaffold0685 (133-239)||(6373-6480)
[»] scaffold0221 (1 HSPs)
scaffold0221 (146-239)||(10764-10858)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 241 - 436
Target Start/End: Original strand, 32804455 - 32804649
Alignment:
Q  241 ttcttaaattcatgaaatgaacacaatactcaattattataagaaggagggagtattatttaagtcattaaactacttgacgaaacaaataagataaaca 340  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  32804455 ttcttaaattcgtgaaatgaacacaatactcaattattataagaagaatggagtattatttaagtcattaa-ctacttgaccaaacaaataagataaaca 32804553  T
Q  341 acagtccactaatccctttcttagatgtatgacaagtgggaggcatgtaaaaaatcaatggccgagattaaaatgaaaatgaacctttcactgttc 436  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32804554 acagtccaataatccctttcttagatgtatgacaagtggcaggcatgtaaaaaatcaatggccgagattaaaatgtaaatgaacctttcactgttc 32804649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 32804291 - 32804447
Alignment:
Q  15 aataattaatgtattcaatcacatttataggaca--tacattaattatttaatgtacctnnnnnnnntgtttttt-cttataaatttgattggatggagt 111  Q
    ||||||||||||||||| ||||||||||| || |  ||||||||| ||| |||||||||        |||||||| |||||||||||||  ||| | |||    
T  32804291 aataattaatgtattcagtcacatttatatgatagatacattaatgattcaatgtacctaaaaaaactgttttttacttataaatttgaccggaggaagt 32804390  T
Q  112 attaattaataccaattttatcactctcaatttcatatattttaatttgcatttata 168  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  32804391 attaattactactaattttatcactctcaatttcatatattttagtttgcatttata 32804447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 32587773 - 32587899
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgac-aaaacagtcaaaactat 212  Q
    |||||||||  ||||| |||||||||||||  |||||||| | ||||||||||| |||||| ||||||||| |||| || || |||||| | |||| |||    
T  32587773 taattaataataatttcatcactctcaattcaatatatttcactttgcatttatgataatggaaaatgcatcaatacttaacaaaaacacttaaaattat 32587872  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    ||||||||| | |||| ||||||||||    
T  32587873 ttttctctcaccttcatttatacattt 32587899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 34813925 - 34814051
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||| ||||| | ||| |||| ||||||||  ||||||| || ||||||||||| ||||||| ||||||| ||||| || |||| |||| | ||||||||    
T  34813925 taatgaatactactttcatcattctcaattcaatatattctactttgcatttatgataatgataaatgcactaatacttaacaagaacacttaaaactat 34814024  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    ||||||||||| |||||| ||||||||    
T  34814025 ttttctctctccttcactaatacattt 34814051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 2571374 - 2571503
Alignment:
Q  117 ttaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactattttt 216  Q
    ||||||| | ||| |||||||||||||  ||||||| || ||||||||||  ||||  || ||||||  |||| || |||| ||| ||||||||| ||||    
T  2571374 ttaatactactttcatcactctcaattcaatatattctactttgcatttaggataagaaataatgcaccaatacttaacaagacactcaaaacta-tttt 2571472  T
Q  217 ctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||| |||||||||| |||||||    
T  2571473 ctctctctttcatttatacattttttcttaa 2571503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 37541181 - 37541079
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttatacatttcttct 244  Q
    ||||||| || ||| |||||||||||| ||| ||||||  |||| |||| ||| ||| ||||||| |||||||||||||||||||||||||| || ||||    
T  37541181 atatattctactttacatttataataaagaagaatgcaccaatagttgataaagacattcaaaaccatttttctctctctttcacttatacactttttct 37541082  T
Q  245 taa 247  Q
    |||    
T  37541081 taa 37541079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 242
Target Start/End: Original strand, 40061817 - 40061946
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||  | ||| |||||||||||||  ||||||| |||||||||||||| ||||||||||||| |  |||| |||| || |||| | ||||  ||    
T  40061817 taattaatattactttcatcactctcaattcaatatattctaatttgcatttatgataatgaaaaatgtaacaatacttgataagaacatttaaaatcat 40061916  T
Q  213 ttttctctctctttcacttatacatttctt 242  Q
    ||||||||||  ||| ||||||||||||||    
T  40061917 ttttctctcttcttcgcttatacatttctt 40061946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 45305878 - 45305969
Alignment:
Q  131 atcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctct 222  Q
    |||| ||||||||  ||||||| || ||||||||||| |||||||| ||||||| |||| ||||||| ||| |||||| |||||| ||||||    
T  45305878 atcaatctcaattcaatatattctactttgcatttatgataatgaagaatgcataaatacttgacaagacactcaaaattattttcctctct 45305969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 29225761 - 29225895
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| ||||||| |||||  ||||||| || ||||||||||| ||||  |  ||||||  |||| ||||||| ||| ||||| |||||    
T  29225761 taattaatactactttcatcactcccaattcaatatattctactttgcatttatgataagaatgaatgcaccaatacttgacaagacactcaaacctatt 29225860  T
Q  214 tt-tctctctctttcacttatacatttcttcttaa 247  Q
    || |||||||||||||||| |||| || |||||||    
T  29225861 ttctctctctctttcacttgtacactttttcttaa 29225895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 35947110 - 35946992
Alignment:
Q  125 aattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgca----ttaatatttgacaaaacagtcaaaactatttttctct 220  Q
    ||||| |||| ||||||||  ||||| ||||  |||||||||| ||||| | |||||||    ||||||||||| || ||| |||||| ||||||||||     
T  35947110 aatttcatcattctcaattcaatatactttatattgcatttatgataataagaaatgcacttattaatatttgataagacactcaaaattatttttctcg 35947011  T
Q  221 ctctttcacttatacattt 239  Q
     ||||||||||||||||||    
T  35947010 ttctttcacttatacattt 35946992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 3718949 - 3718837
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||| |  || |||||||||||||  ||||||| || ||| ||||||| ||||||| |||||||  |||| ||||||| | || | ||||||||    
T  3718949 taattaatactaccttcatcactctcaattcaatatattatactttacatttatgataatgataaatgcacaaatacttgacaagagcacttaaaactat 3718850  T
Q  213 ttttctctctctt 225  Q
    |||||||||||||    
T  3718849 ttttctctctctt 3718837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 263
Target Start/End: Original strand, 39420592 - 39420746
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaa---tgcattaatatttgacaaaacagtcaaaact 210  Q
    |||||||||| | ||| || | ||||||||  | || ||||| ||||||||||||||||  |||||   ||||  |||| ||||||| ||| |||||| |    
T  39420592 taattaatactactttcataattctcaattcaacatgttttactttgcatttataataaaaaaaaacaatgcaccaatacttgacaagacactcaaaatt 39420691  T
Q  211 atttttctctctctttcacttataca-tttcttcttaa-attcatgaaatgaaca 263  Q
    |||||||||||||||||| ||||||| ||| ||||||| || | |||||||||||    
T  39420692 atttttctctctctttcatttatacacttttttcttaatatgcgtgaaatgaaca 39420746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 36618909 - 36618874
Alignment:
Q  8 tacattgaataattaatgtattcaatcacatttata 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  36618909 tacattgaataattaatgtattcaatcacatttata 36618874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 705449 - 705315
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactat 212  Q
    |||||||||  | ||||| |||||||||||  ||||||| || ||| ||| ||| |||| ||| |||||| ||||| || | ||| ||| ||||||  ||    
T  705449 taattaatattacttttaccactctcaattcaatatattatactttacatctatgataaagaagaatgcactaatacttaataaagacattcaaaatcat 705350  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||| ||||||| |||||||||||| |||||||    
T  705349 ttttctttctctttaacttatacattttttcttaa 705315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5346994 - 5347036
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttata 43  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  5346994 ttttagatacattgaataattaatgtatccattcacatttata 5347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 10587681 - 10587548
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||| | ||| |||||||||||||  ||||||| || ||||||||||| |||||||| |||| | | ||| |||| ||  ||| | |||| |||    
T  10587681 taattaatactactttcatcactctcaattcaatatattctattttgcatttatgataatgaagaatgta-tcataattgataatgacacttaaaattat 10587583  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||| |||||||||||| || || |||||||    
T  10587582 ttttctctttctttcacttatgcactttttcttaa 10587548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 26583736 - 26583870
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||  | ||| ||||||| |||||  ||||||| || ||||||||||| |||| ||| ||||||  |||| |||| |||  || |||||   ||    
T  26583736 taattaataatattttcatcactcccaattcaatatattctattttgcatttatgataaagaagaatgcaccaatagttgataaaggcactcaaactcat 26583835  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||||||||||| || |||||||    
T  26583836 ttttctctctctttcacttatacactttttcttaa 26583870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 27932914 - 27932812
Alignment:
Q  133 cactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactatttttctctctctttcactt 231  Q
    |||||||||||  ||||||| || ||||||||||| |||| ||| ||||||  |||| |||||||  ||| |||||   |||||||||||||||||||||    
T  27932914 cactctcaattcaatatattctactttgcatttatgataaagaagaatgcaccaatagttgacaaggacactcaaacgcatttttctctctctttcactt 27932815  T
Q  232 ata 234  Q
    |||    
T  27932814 ata 27932812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 29756242 - 29756108
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | ||| | ||||| |||||  ||||||| || ||||||||||| |||| ||| ||||||  |||| |||| ||   || ||||| | ||    
T  29756242 taattaatactactttcaccactcccaattcaatatattctactttgcatttatgataaagaagaatgcaccaatagttgataagggcactcaaacccat 29756143  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||||||||||| || |||||||    
T  29756142 ttttctctctctttcacttatacactttttcttaa 29756108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 49166640 - 49166709
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgta 68  Q
    |||||| |||||| |||||||||||||| || |||||||||||||  | |||||||||||||| ||||||    
T  49166640 ttttaggtacattaaataattaatgtatccagtcacatttataggttagatacattaattattcaatgta 49166709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8900902 - 8900830
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    |||||| || |||||||||||||||||| |  |||||||||||||  | |||||||||||||| |||||||||    
T  8900902 ttttaggtatattgaataattaatgtatccggtcacatttataggttagatacattaattattcaatgtacct 8900830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11900936 - 11900864
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    |||||||||||||||||||||||| |||    |||||||||||||  | |||||||||||||| |||||||||    
T  11900936 ttttagatacattgaataattaatatatctggtcacatttataggtcaaatacattaattattcaatgtacct 11900864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 26606205 - 26606152
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa 199  Q
    |||||||||||||||||||||| |||||||| |||||| | ||||| |||||||    
T  26606205 atatattttaatttgcatttatgataatgaagaatgcacttatattagacaaaa 26606152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 26760382 - 26760418
Alignment:
Q  211 atttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26760382 atttttctctctctttcacttatacattttttcttaa 26760418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 17342836 - 17342951
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgac-aaaacagtcaaaactat 212  Q
    |||||||||| | |||||||||||||||||  |||||||| | |||| |||||| |||||| | ||||||  |||| || || |||||| | ||||| ||    
T  17342836 taattaatactacttttatcactctcaattcaatatatttcactttgtatttatgataatggagaatgcaccaatacttaacaaaaacacttaaaaccat 17342935  T
Q  213 ttttctctctctttca 228  Q
    ||||| ||||| ||||    
T  17342936 ttttccctctccttca 17342951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 21304887 - 21304781
Alignment:
Q  133 cactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcactt 231  Q
    |||||| ||||  ||||||| || |||  |||||| |||| ||||||||||| |||| |||||||| ||| ||||||| | |||| ||||||||||| ||    
T  21304887 cactcttaattcaatatattatactttatatttatgataaagaaaaatgcatcaatacttgacaaagacactcaaaac-aattttatctctctttcattt 21304789  T
Q  232 atacattt 239  Q
    ||||||||    
T  21304788 atacattt 21304781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 25819425 - 25819338
Alignment:
Q  135 ctctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctct 222  Q
    |||||||||| |||| || || ||||||||||| |||| ||  ||||||  ||||  |||||||||| |||||| |||||||||||||    
T  25819425 ctctcaatttaatattttctactttgcatttatgataaggaggaatgcaccaataaatgacaaaacactcaaaattatttttctctct 25819338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 28706676 - 28706597
Alignment:
Q  161 catttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttatacattt 239  Q
    ||||||| |||| ||||||||||| |||| ||||||||  || ||||||| ||||||||||||  |||| ||||||||||    
T  28706676 catttatgataaagaaaaatgcatcaatacttgacaaaggcactcaaaaccatttttctctcttattcatttatacattt 28706597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 49494171 - 49494137
Alignment:
Q  205 aaaactatttttctctctctttcacttatacattt 239  Q
    |||||||||||||||||||||||| ||||||||||    
T  49494171 aaaactatttttctctctctttcatttatacattt 49494137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 50302471 - 50302433
Alignment:
Q  5 agatacattgaataattaatgtattcaatcacatttata 43  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  50302471 agatacattgaataattaatatattcagtcacatttata 50302433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 50926788 - 50926889
Alignment:
Q  147 tatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcacttatacatttcttctt 245  Q
    |||||| || ||| ||||||| |||| ||| ||||||  |||| ||||||||  || ||||||| ||||||||||||||||  |||||||| || |||||    
T  50926788 tatattctactttacatttatgataaagaagaatgcaccaatacttgacaaatgcattcaaaaccatttttctctctctttttcttatacaatttttctt 50926887  T
Q  246 aa 247  Q
    ||    
T  50926888 aa 50926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25395950 - 25395990
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacattta 41  Q
    ||||||||||||||||||||||||||||  ||||| |||||    
T  25395950 ttttagatacattgaataattaatgtatctaatcatattta 25395990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 27210048 - 27209944
Alignment:
Q  133 cactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcactt 231  Q
    |||||||||||  ||||||| |  ||| ||||||| |||| ||| ||||||  |||| ||| |||| ||| ||||||  |||||||||||||||||| ||    
T  27210048 cactctcaattcaatatattctcctttacatttatgataaagaagaatgcaccaatacttgtcaaagacactcaaaatcatttttctctctctttcattt 27209949  T
Q  232 ataca 236  Q
    |||||    
T  27209948 ataca 27209944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 36326258 - 36326182
Alignment:
Q  161 catttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttataca 236  Q
    ||||||| ||||  || ||||||  ||||||||||||| ||| ||||||| ||| |||||||||||||| |||||||    
T  36326258 catttatgataaacaagaatgcaccaatatttgacaaagacactcaaaaccattgttctctctctttcatttataca 36326182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 4485918 - 4486007
Alignment:
Q  158 ttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |||||||    
T  4485918 ttgcatttatgataatggaaaatgaattaatatttgacaaaacactcaaaactatttttctctttctttcacttatatattttttcttaa 4486007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 38160251 - 38160125
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactat 212  Q
    |||||||||  | |||||||||||||||||  |||||||| | |||| |||||| |||||| | ||||||| ||||||||||||| ||| | ||||| ||    
T  38160251 taattaatattacttttatcactctcaattcaatatatttcactttgtatttatgataatggagaatgcatcaatatttgacaaagacacttaaaacaat 38160152  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    ||||||||||| || | ||||||||||    
T  38160151 ttttctctctcctttatttatacattt 38160125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 38319919 - 38320053
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||| | ||| |||||||||||||  ||||||| || ||||||||||| |||| ||| ||||||  |||| |||| ||   || ||||| | ||    
T  38319919 taattaatactactttcatcactctcaattcaatatattctactttgcatttatgataaagaagaatgcaccaatagttgataagggcactcaaacccat 38320018  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||||||||||| || |||||||    
T  38320019 ttttctctctctttcacttatacactttttcttaa 38320053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38562234 - 38562165
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttataggac--atacattaattatttaatgta 68  Q
    |||||||||||||||||||||||||||| |  |||||||||||||||  |||||||||||||| ||||||    
T  38562234 ttttagatacattgaataattaatgtatccggtcacatttataggacatatacattaattattcaatgta 38562165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 4727528 - 4727654
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaacta 211  Q
    ||||||||||||| | | |||| | | ||||| ||||||| |||||||||||||| |||||| ||||||||| ||||||| |||| |||| | ||| | |    
T  4727528 ttaattaataccattatcatcattataaattttatatattctaatttgcatttatgataatggaaaatgcatcaatatttaacaagaacatttaaatc-a 4727626  T
Q  212 tttttctctctctttcacttatacattt 239  Q
    |||||||||||| |||| ||||| ||||    
T  4727627 tttttctctctccttcaattatatattt 4727654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 29990572 - 29990446
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaa-aatgcattaatatttgacaaaacagtcaaaacta 211  Q
    ||||||||||| | |||| ||||| ||||||  |||||||  | |||  |||||| ||| ||||| ||||||| |||| ||||||| ||| ||||| |||    
T  29990572 ttaattaatactatttttttcactttcaattcaatatattcaactttatatttatgata-tgaaagaatgcatcaatacttgacaagacactcaaatcta 29990474  T
Q  212 tttttctctctctttcacttatacattt 239  Q
    ||||| ||||||||||||||||||||||    
T  29990473 tttttttctctctttcacttatacattt 29990446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 49448849 - 49448975
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | ||| |||| ||||||||  ||||||| || ||||||||||| |||||  | ||||||  |||| ||||||| | || | ||||| ||    
T  49448849 taattaatactactttcatcattctcaattcaatatattatactttgcatttatgataatagagaatgcacaaatacttgacaagagcacttaaaaccat 49448948  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    ||||||||||| |||||||||||||||    
T  49448949 ttttctctctccttcacttatacattt 49448975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 18872718 - 18872620
Alignment:
Q  147 tatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttctta 246  Q
    |||||| || ||||||||||| |||| || |||||||| |||| |||| || ||| ||||  ||||||||| |||||||||||||||||| || ||||||    
T  18872718 tatattctattttgcatttatgataaggagaaatgcatcaatacttgataagacactcaa--ctatttttcgctctctttcacttatacactttttctta 18872621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 35027579 - 35027474
Alignment:
Q  131 atcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcact 230  Q
    |||||| ||||||| |||||||| | ||||| ||||| ||||| | |||||||  |||||||||||| ||| | |||| |||||||||| || ||||| |    
T  35027579 atcactttcaatttaatatatttaactttgcgtttatgataataataaatgcaccaatatttgacaagacatttaaaattatttttctccctttttcaat 35027480  T
Q  231 tataca 236  Q
    ||||||    
T  35027479 tataca 35027474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 5499464 - 5499398
Alignment:
Q  178 aatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||| |||||||||||   || |||||||||||||||| ||||||||||||||||| || |||||||    
T  5499464 aatgcatcaatatttgaca---cactcaaaactatttttctttctctttcacttatacactttttcttaa 5499398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 40021047 - 40020928
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | | | ||||||| |||||| ||||||| |  ||||||| ||| ||||||  |||||||  |||| ||||||||| || ||||||| ||    
T  40021047 taattaatactactgtcatcactcccaatttaatatattcttttttgcatctatgataatggtaaatgcaccaatacttgacaaaaacattcaaaaccat 40020948  T
Q  213 ttttctctctctttcactta 232  Q
    ||||||||||| ||||||||    
T  40020947 ttttctctctcattcactta 40020928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 13529917 - 13530003
Alignment:
Q  161 catttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||| |||| | ||||||||  |||| || |||| ||| ||||||| ||||||||||||||||| ||| ||||||| |||||||    
T  13529917 catttatcataagggaaaatgcaccaatagttcacaagacactcaaaaccatttttctctctctttcgcttgtacattttttcttaa 13530003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 47277781 - 47277647
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||| | ||| |||||||||||||  |||||||||| ||| ||||||| |||| |||||||| |  ||||  ||||||   || | |||| |||    
T  47277781 taattaatactactttaatcactctcaattcaatatattttactttacatttatgataaagaaaaatgtacaaatacctgacaagggcattgaaaaatat 47277682  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||| ||| ||||| |||||||||||| |||||||    
T  47277681 ttttatctatcttttacttatacattttttcttaa 47277647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 52677113 - 52677055
Alignment:
Q  131 atcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaata 189  Q
    |||||||||||||| |||||||||| ||| ||||||| ||||||| |||||||| ||||    
T  52677113 atcactctcaatttaatatattttactttacatttatgataatgataaatgcatcaata 52677055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 54729582 - 54729457
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | ||| ||||| |||||||  |||||||  | ||||||||||| ||| || | ||| || ||||| || |||||| || | ||||||||    
T  54729582 taattaatactactttcatcac-ctcaattcaatatattccactttgcatttatgatagtggagaatacactaatacttaacaaaaacacttaaaactat 54729484  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    |||||||||||||||| ||||||||||    
T  54729483 ttttctctctctttcatttatacattt 54729457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 38615045 - 38614960
Alignment:
Q  131 atcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactattttt 216  Q
    ||||||| |||||  |||||||||| ||||||||||| ||||  |||||||||  |||| || |||| ||| ||||||||||||||    
T  38615045 atcactcccaattcaatatattttattttgcatttatgataagaaaaaatgcaccaatacttaacaagacactcaaaactattttt 38614960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 11583972 - 11583912
Alignment:
Q  112 attaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataa 172  Q
    |||||||||||  | ||| |||||||||||||| |||||||||| ||| ||||||||||||    
T  11583972 attaattaatattactttcatcactctcaatttaatatattttactttacatttataataa 11583912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 4354476 - 4354567
Alignment:
Q  134 actctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctct 224  Q
    ||||||||||| ||||||| ||| || ||||||| |||| ||| | ||||  ||||||| | |||| || ||||||||||||||||||||||    
T  4354476 actctcaatttaatatattctaaattacatttatgataaagaatagtgcaccaatatttaaaaaaaacactcaaaactatttttctctctct 4354567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 46958731 - 46958887
Alignment:
Q  115 aattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactattt 214  Q
    ||||||||| | ||| |||||||||||||  ||||||| || ||||| ||||| ||||  |  ||||||   ||| || |||| ||| |||||||||  |    
T  46958731 aattaatactactttaatcactctcaattcaatatattctactttgcgtttatgataagaaggaatgcaccgatacttaacaagacactcaaaacta--t 46958828  T
Q  215 ttctctctctttcacttatacatttcttcttaa-attcatgaaatgaacacaatactca 272  Q
    |||||| ||||||||||||||| || ||||||| ||   ||||||||||| ||||||||    
T  46958829 ttctctatctttcacttatacactttttcttaatatgtgtgaaatgaacaaaatactca 46958887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 41594874 - 41594828
Alignment:
Q  186 aatatttgacaaaacagtcaaaactatttttctctctctttcactta 232  Q
    ||||||||||||  || ||||||| ||||||||||||||||||||||    
T  41594874 aatatttgacaaggcactcaaaaccatttttctctctctttcactta 41594828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 43335122 - 43334996
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||| | |||  ||||||||||||  |||||||  | ||| |||||| ||||||| | |||||| ||||||||||||| |||| | |||| |||    
T  43335122 taattaatactactttcttcactctcaattcaatatattccactttccatttaaaataatggagaatgcactaatatttgacaagaacacttaaaattat 43335023  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    |||||| |  | |||| ||||||||||    
T  43335022 ttttctattacattcatttatacattt 43334996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 48400710 - 48400604
Alignment:
Q  134 actctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcactta 232  Q
    ||||||||||  ||||||| || ||| ||||||| |||| ||| ||| ||| |||| |||| |||| || | ||||  |||||||||||||||||| |||    
T  48400710 actctcaattcaatatattctactttacatttatgataaagaagaatacatcaatacttgataaaagcattaaaaatcatttttctctctctttcattta 48400611  T
Q  233 tacattt 239  Q
    |||||||    
T  48400610 tacattt 48400604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 49401696 - 49401790
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttatacattt 239  Q
    ||||||| || ||| |||||||||||| ||| |||| || |||| |||| ||  ||| ||||||||||||||||||||||||   ||||||||||    
T  49401696 atatattctactttacatttataataaagaacaatgtatcaatacttgaaaaggacattcaaaactatttttctctctctttactttatacattt 49401790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 35029069 - 35029166
Alignment:
Q  140 aatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttataca 236  Q
    ||||| || |||| || ||| ||||||| |||| ||| |||| | ||||| |||||||| ||| || ||||||||||||||||| ||||| |||||||    
T  35029069 aatttaatttattctactttacatttatgataaagaagaatgtactaatacttgacaaagacactcgaaactatttttctctctttttcatttataca 35029166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 51076513 - 51076472
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatatttta 155  Q
    |||||||||  |||||||||||||||||||| ||||||||||    
T  51076513 taattaatattaattttatcactctcaatttaatatatttta 51076472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 20964289 - 20964253
Alignment:
Q  211 atttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||||||||||||| || |||||||    
T  20964289 atttttctctctctttcacttatacactttttcttaa 20964253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 25125114 - 25125074
Alignment:
Q  169 ataatgaaaaatgcattaatatttgacaaaacagtcaaaac 209  Q
    ||||||| ||||||||||||| ||||||||||| |||||||    
T  25125114 ataatgagaaatgcattaatacttgacaaaacactcaaaac 25125074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 28330900 - 28330936
Alignment:
Q  211 atttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||||||||||||| || |||||||    
T  28330900 atttttctctctctttcacttatacactttttcttaa 28330936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 29550736 - 29550700
Alignment:
Q  203 tcaaaactatttttctctctctttcacttatacattt 239  Q
    |||||||||||||||||||||||||  ||||||||||    
T  29550736 tcaaaactatttttctctctctttcctttatacattt 29550700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 42132921 - 42132957
Alignment:
Q  211 atttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||||||||||||| || |||||||    
T  42132921 atttttctctctctttcacttatacactttttcttaa 42132957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 49218784 - 49218748
Alignment:
Q  211 atttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||||||||||||| || |||||||    
T  49218784 atttttctctctctttcacttatacactttttcttaa 49218748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 52378781 - 52378741
Alignment:
Q  2 tttagatacattgaataattaatgtattcaatcacatttat 42  Q
    |||||||| |||||||||||||||||||  |||||||||||    
T  52378781 tttagatatattgaataattaatgtatttgatcacatttat 52378741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 40710596 - 40710717
Alignment:
Q  125 aattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctct 224  Q
    ||||| |||||||||||||  ||||||  || ||||||| ||| |||| ||| ||||||  |||||||||||||||| |||||||||||||||||||| |    
T  40710596 aatttcatcactctcaattcaatatatgctactttgcatgtatgataaggaagaatgcacgaatatttgacaaaacactcaaaactatttttctctcttt 40710695  T
Q  225 ttcacttatacatttcttctta 246  Q
    |||||||||| |||| ||||||    
T  40710696 ttcacttatagattttttctta 40710717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 7420977 - 7420856
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactat 212  Q
    ||||||||||  |||||  | |||||| |||  |||||||||| ||| ||||||| |||||| |||||||||||||||||||||| ||| |||||| | |    
T  7420977 ttaattaatattaatttcgttactctctattaaatatattttacttttcatttatgataatggaaaatgcattaatatttgacaagacactcaaaaatgt 7420878  T
Q  213 ttttctctctctttcacttata 234  Q
    |||| |||||||||||||||||    
T  7420877 ttttatctctctttcacttata 7420856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 44424362 - 44424240
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| |||| ||||||||  |||||||  | ||||||||||| ||||| |||||||||| |||| ||||||| ||| ||||||| | |    
T  44424362 taattaatactactttcatcattctcaattcaatatattcaactttgcatttatgataataaaaaatgcatcaatacttgacaagacattcaaaacca-t 44424264  T
Q  214 tttctctctctttcacttatacat 237  Q
    ||||||||||||||||||||||||    
T  44424263 tttctctctctttcacttatacat 44424240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 19264573 - 19264658
Alignment:
Q  162 atttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||| |||   |||||||||||||| |||||||    
T  19264573 atttatgataatgaaaaatgcattaatatttgacaagacacttaaaactatttttctttcttcatcacttatacattttttcttaa 19264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 31592557 - 31592680
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactat 212  Q
    ||||||||||  | ||| |||||||||||||  ||||||| || |||| |||||| ||||  || ||||||  |||| ||||||| ||| || |||||||    
T  31592557 ttaattaatattattttcatcactctcaattcaatatattctactttgtatttatgataagaaagaatgcagcaatacttgacaagacactcgaaactat 31592656  T
Q  213 ttttctctctctttcacttataca 236  Q
    ||||||||||||||||||||||||    
T  31592657 ttttctctctctttcacttataca 31592680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 43950531 - 43950421
Alignment:
Q  130 tatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttca 228  Q
    ||||||| ||||||  ||||||| || |||||||||||  ||||| ||||| ||| |||| || |||||| || | ||||||||||||||||||||||||    
T  43950531 tatcactttcaattcaatatattctactttgcatttatgttaatggaaaatacatcaatacttaacaaaaacatttaaaactatttttctctctctttca 43950432  T
Q  229 cttatacattt 239  Q
    |||||||||||    
T  43950431 cttatacattt 43950421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 4794581 - 4794691
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||| | ||| |||||| ||||||  |||||||  | ||||||||||| ||||| |||||||||| |||||||||||| |||| |||||| |||    
T  4794581 taattaatactactttcatcactttcaattcaatatattccactttgcatttatgataataaaaaatgcatcaatatttgacaagaacactcaaaattat 4794680  T
Q  213 ttttctctctc 223  Q
    |||| ||||||    
T  4794681 ttttttctctc 4794691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 8550741 - 8550615
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||| | ||| |||||||| ||||  |||||||  | ||||||||||| |||||| | ||||||  |||| ||||||| |||| | ||||| |     
T  8550741 taattaatactactttcatcactcttaattcaatatattagactttgcatttatgataatggagaatgcacaaatacttgacaagaacacttaaaaccac 8550642  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    |||||||||||||||||||||||||||    
T  8550641 ttttctctctctttcacttatacattt 8550615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 25604401 - 25604490
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttataca 236  Q
    ||||||| |||||||||||||| ||||  || ||||||  |||| || |||| ||| ||||||||||||||||||||||||||||||||||    
T  25604401 atatattctaatttgcatttatgataagaaagaatgcaccaatactt-acaagacactcaaaactatttttctctctctttcacttataca 25604490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 19515921 - 19516001
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttc 227  Q
    |||||||||| ||||||||||| ||||||||||||| |  |||| ||||||| ||| | |||||||||||||||||||||||    
T  19515921 atatattttactttgcatttatgataatgaaaaatgaaccaatacttgacaagacact-aaaactatttttctctctctttc 19516001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 9937066 - 9937133
Alignment:
Q  153 ttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctct 220  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||| ||| ||||||||||||| ||||    
T  9937066 ttaatttgcatttatgataatgagaaatgcaacaatatttgacaagacactcaaaactattttactct 9937133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 6972639 - 6972506
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||  | ||||| |||||||||||  ||||||| || ||||||||||| |||| ||| ||||||  |||| |||| ||   || ||||||| ||    
T  6972639 taattaatattacttttaccactctcaattcaatatattctactttgcatttatgataaagaagaatgcacaaatagttgataagggcactcaaaaccat 6972540  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    ||| ||||||||||||||||||||||| |||||||    
T  6972539 ttt-ctctctctttcacttatacattttttcttaa 6972506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 23684967 - 23685093
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgac-aaaacagtcaaaactat 212  Q
    |||||||||| | ||| |||||||||||||  |||||||| | ||||||||||| ||| || | |||||| ||||| || || |||||| | |||||||     
T  23684967 taattaatactactttcatcactctcaattcaatatatttcactttgcatttatgatagtggagaatgcactaatacttaacaaaaacacttaaaactaa 23685066  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    ||||||||||| || | ||||||||||    
T  23685067 ttttctctctcctttatttatacattt 23685093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 29938013 - 29937890
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||  | |||||||| ||||||||  |||||||||| |||| |||||| ||||  | ||||||| ||||| || || | | | |||||||||||    
T  29938013 taattaatattacttttatcattctcaattcaatatattttactttgtatttatgataagaagaaatgcactaatacttaactagatactcaaaactatt 29937914  T
Q  214 tttctctctctttcacttatacat 237  Q
    ||| ||||| ||| ||||||||||    
T  29937913 tttttctcttttttacttatacat 29937890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 43182327 - 43182406
Alignment:
Q  161 catttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttatacattt 239  Q
    |||||||||||| ||| ||||||  ||||||||||||| ||| |||||| ||||||| ||||||||||  ||||||||||    
T  43182327 catttataataaagaagaatgcaccaatatttgacaaagacactcaaaattatttttttctctctttcctttatacattt 43182406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 314467 - 314569
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcacttatacatttcttct 244  Q
    ||||||| || ||||||||||| |||| ||| ||||||| |||| |||| ||   || ||||||| ||||| |||||||||||||||||||| || ||||    
T  314467 atatattctactttgcatttatgataaagaagaatgcatcaatagttgataagggcactcaaaaccattttcctctctctttcacttatacactttttct 314566  T
Q  245 taa 247  Q
    |||    
T  314567 taa 314569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 2048320 - 2048426
Alignment:
Q  134 actctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcactta 232  Q
    ||||||||||  ||||||| || ||||||||||| ||||  || ||||||  |||| |||| || | || ||| ||| ||||||||||||||||||||||    
T  2048320 actctcaattcaatatattctactttgcatttatgataaacaagaatgcaccaatagttgataagagcactcataaccatttttctctctctttcactta 2048419  T
Q  233 tacattt 239  Q
    |||||||    
T  2048420 tacattt 2048426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 13222108 - 13222210
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcacttatacatttcttct 244  Q
    |||||||||| ||||||||||| |||| ||| ||| ||  |||| |||| ||   || ||||| | ||||||||||||||||||||||||||||| ||||    
T  13222108 atatattttactttgcatttatgataaagaagaatacaccaatagttgataagggcactcaaacccatttttctctctctttcacttatacattttttct 13222207  T
Q  245 taa 247  Q
    |||    
T  13222208 taa 13222210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 12949991 - 12949938
Alignment:
Q  186 aatatttgacaaaacagtcaaaactatttttctctctctttcacttatacattt 239  Q
    |||| ||||||| ||| |||||| ||||||| ||||||||||||||||||||||    
T  12949991 aatacttgacaagacactcaaaattatttttttctctctttcacttatacattt 12949938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 3199906 - 3200037
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactat 212  Q
    |||||||||| | ||| | ||||| |||||  ||||||| || ||||||||||| ||||   ||||||||  |||| || ||||  ||| ||||||| ||    
T  3199906 taattaatactactttcaccactcccaattcaatatattatactttgcatttatgataa---aaaatgcacaaatagttaacaatgacactcaaaaccat 3200002  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||| |||||||| | |||||||    
T  3200003 ttttctctctctttcatttatacatcttttcttaa 3200037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 6075551 - 6075610
Alignment:
Q  180 tgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacattt 239  Q
    |||| ||||| || |||| ||| |||||||||||||||| ||||||||||||| ||||||    
T  6075551 tgcactaatacttaacaagacactcaaaactatttttctttctctttcacttagacattt 6075610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 26273766 - 26273845
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatattt 192  Q
    ||||||||||| | ||| ||||||| |||||  ||||||| || ||||||||||| ||||||| ||||| || |||||||    
T  26273766 ttaattaatactactttcatcactcccaattcaatatattctactttgcatttatgataatgataaatgtatcaatattt 26273845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 44024758 - 44024809
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa 197  Q
    ||||||| || ||||||||||| ||||||| |||||||| ||||||||||||    
T  44024758 atatattctactttgcatttatgataatgagaaatgcatcaatatttgacaa 44024809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 7213503 - 7213609
Alignment:
Q  134 actctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcactta 232  Q
    ||||||||||  |||||||  | ||| |||||||||||| ||| ||||||  ||||||||| |||  || ||||||  |||||||||||| ||||| |||    
T  7213503 actctcaattcaatatattccactttacatttataataaagaagaatgcaccaatatttgataaaggcactcaaaatcatttttctctctatttcattta 7213602  T
Q  233 tacattt 239  Q
    |||||||    
T  7213603 tacattt 7213609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 14384121 - 14384043
Alignment:
Q  203 tcaaaactatttttctctctctttcacttatacatttcttcttaa-attcatgaaatgaacacaatactcaattattat 280  Q
    ||||||| |||||||||||||||||| ||||| |||| ||||||| ||  |||||||||||| |||  | |||||||||    
T  14384121 tcaaaaccatttttctctctctttcatttatatattttttcttaatatgtatgaaatgaacaaaatgtttaattattat 14384043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 3487402 - 3487487
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa 199  Q
    |||||||||  | ||| |||||||||||||  ||||||| || ||||||||| ||||||||  |||||||| |||| |||| ||||    
T  3487402 taattaatattactttcatcactctcaattcaatatattctactttgcatttgtaataatggtaaatgcatcaatacttgataaaa 3487487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 5425937 - 5426000
Alignment:
Q  186 aatatttgacaaaacagtcaaaactatttttctc--tctctttcacttatacatttcttcttaa 247  Q
    |||| ||||||| ||| ||||||||||| |||||  ||||||||||||||||| || |||||||    
T  5425937 aatacttgacaatacactcaaaactattattctctctctctttcacttatacactttttcttaa 5426000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 11842558 - 11842602
Alignment:
Q  129 ttatcactctcaatttcatatattttaatttgcatttataataat 173  Q
    |||||||||||||||  |||||||||| ||||||||||| |||||    
T  11842558 ttatcactctcaattcaatatattttattttgcatttatgataat 11842602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 53583635 - 53583527
Alignment:
Q  138 tcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacat 237  Q
    |||||| |||||||| || |||||||||||||||||||| ||||||| |||| ||||||| ||| |||||||||||||||| ||||||||  |||||||     
T  53583635 tcaattccatatattctactttgcatttataataatgaagaatgcatcaatacttgacaacacattcaaaactatttttctatctctttcttttatacac 53583536  T
Q  238 ttcttctta 246  Q
    || ||||||    
T  53583535 tttttctta 53583527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 39329849 - 39329716
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| |||||||||||||  ||||||| || ||||||||||| ||||  || ||||||  |||| || |||| ||| |||||||||||    
T  39329849 taattaatactactttcatcactctcaattcaatatattctactttgcatttatgataagaaagaatgcaccaatacttaacaagacattcaaaactatt 39329750  T
Q  214 tttctctctctttcacttatacatttcttcttaa 247  Q
    | ||| |||||||||||||||||||| |||||||    
T  39329749 tatctttctctttcacttatacattttttcttaa 39329716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 9218153 - 9218286
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| |||||||||||||   |||||| || ||||||||||| ||||  || ||||||  |||| || || | ||| |||||||||||    
T  9218153 taattaatactactttcatcactctcaattcattatattctactttgcatttatgataagaaagaatgcaccaatacttaacgagacactcaaaactatt 9218252  T
Q  214 tttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||||||||||||||||||| || |||||||    
T  9218253 tttctctctctttcacttatacactttttcttaa 9218286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 41287290 - 41287394
Alignment:
Q  134 actctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcactta 232  Q
    ||||||||||  ||||||| || ||| ||||||| |||| ||| ||||||| |||| |||||||| | ||||||||| ||||||||||||||||||||||    
T  41287290 actctcaattcaatatattctactttacatttatgataaagaataatgcatcaatacttgacaaagatagtcaaaaccatttttctctctctttcactta 41287389  T
Q  233 tacat 237  Q
    |||||    
T  41287390 tacat 41287394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 38524348 - 38524266
Alignment:
Q  157 tttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacattt 239  Q
    |||| |||||| || ||||||||| ||| |||| |||| |||||| |||||||||||||||| | ||||||||||||||||||    
T  38524348 tttgtatttatgatgatgaaaaatacatcaatacttgataaaacattcaaaactatttttctttttctttcacttatacattt 38524266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 42547205 - 42547072
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| ||||||| |||||  ||||||| |  ||||||||||| ||||  || ||||||  |||| || |||| ||| |||||||||||    
T  42547205 taattaatactactttcatcactcccaattcaatatattctcttttgcatttatgataagaaagaatgcaccaatacttaacaagacattcaaaactatt 42547106  T
Q  214 tttctctctctttcacttatacatttcttcttaa 247  Q
    ||| ||||||||| ||||||| |||| |||||||    
T  42547105 tttttctctcttttacttataaattttttcttaa 42547072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 31650932 - 31651024
Alignment:
Q  127 ttttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctc 219  Q
    |||||||||| ||||||| ||||||| ||||||| |||||| |||||||||||||||  |||| ||||||| ||| | ||||  |||||||||    
T  31650932 ttttatcactttcaatttaatatattctaatttgtatttatgataatgaaaaatgcacaaatacttgacaagacacttaaaatcatttttctc 31651024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 9017841 - 9017935
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcacttatacattt 239  Q
    |||||||| | ||||||||||||||| || | ||||||  |||| || |||||| || | |||||||||||||||||||||||| ||||||||||    
T  9017841 atatatttcactttgcatttataatagtggagaatgcaccaatacttaacaaaagcacttaaaactatttttctctctctttcatttatacattt 9017935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19790831 - 19790759
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    |||||||||||||||||| || |||||| ||||||||||||||||  |  ||||||||||||| |||||||||    
T  19790831 ttttagatacattgaatacttgatgtatgcaatcacatttataggtaaggtacattaattattcaatgtacct 19790759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29212875 - 29212947
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    ||||||||| |||||||||| ||||||| || |||||||||||||  | |||||||||||||| |||||||||    
T  29212875 ttttagatatattgaataatcaatgtatccagtcacatttataggtcagatacattaattattcaatgtacct 29212947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 27668426 - 27668351
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaata 189  Q
    |||||||||| | |||||||||||| ||||  |||||||| | ||||||||||| |||||||||||| ||| ||||    
T  27668426 taattaatactacttttatcactcttaattcaatatatttcactttgcatttatgataatgaaaaatacatcaata 27668351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 30261601 - 30261482
Alignment:
Q  114 taattaataccaattttatcactctcaatttca-tatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactat 212  Q
    |||||||||| | ||| ||||||| ||| |||| ||||||  | ||| ||||||| ||||  |  ||||||  |||| |||||||  |||||||||||||    
T  30261601 taattaatactactttcatcactcccaaattcaatatattccactttacatttatgataagaaggaatgcaccaatacttgacaagccagtcaaaactat 30261502  T
Q  213 ttttctctctctttcactta 232  Q
    ||||||||||||||||||||    
T  30261501 ttttctctctctttcactta 30261482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 32977869 - 32977776
Alignment:
Q  134 actctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctcttt 226  Q
    ||||||||||  ||||||| ||| || ||||||| |||| ||||||||||| |||| |||| |||  || ||||||||||||||||| ||||||    
T  32977869 actctcaattcaatatattctaaattacatttatgataaagaaaaatgcatcaatacttgaaaaatgcactcaaaactatttttctccctcttt 32977776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 3862271 - 3862141
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||  | ||| |||||||||||||   ||||||||||||||||||||| ||||||   ||||||| |||  ||||||| ||| ||||||  |||    
T  3862271 taattaatattactttcatcactctcaattcagtatattttaatttgcatttatgataatgtggaatgcatcaatccttgacaagacactcaaaataatt 3862172  T
Q  214 tt--tctctctctttcacttatacatttctt 242  Q
    ||  ||||| | ||||||| ||||| |||||    
T  3862171 ttcatctctatttttcactaatacacttctt 3862141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 54021525 - 54021434
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttataca 236  Q
    ||||||| || ||| |||||||||||| ||| ||||||  ||||||||| ||| ||| ||||||  |||||||||||||||| | |||||||    
T  54021525 atatattctactttacatttataataaagaagaatgcaacaatatttgataaagacactcaaaatcatttttctctctcttttatttataca 54021434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 1334880 - 1334758
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | ||| | ||||| |||||  ||||||| || ||| ||||||| |||| ||| ||||||  |||| |||| |||  || |||||| |||    
T  1334880 taattaatactactttcaccactcccaattcaatatattctactttacatttatgataaagaagaatgcaccaatacttgataaaggcattcaaaattat 1334781  T
Q  213 ttttctctctctttcacttatac 235  Q
    |||||||||||||||| ||||||    
T  1334780 ttttctctctctttcatttatac 1334758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 39866652 - 39866526
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||||| ||| ||||||| |||||  || ||||| | ||||||||||| ||| || | ||| ||  |||| || |||||| || | ||||||||    
T  39866652 taattaataccactttcatcactcacaattcaatgtatttcactttgcatttatgatagtggagaatacaccaatacttaacaaaatcacttaaaactat 39866553  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    |||||||| || |||| ||||||||||    
T  39866552 ttttctctttccttcatttatacattt 39866526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 54122291 - 54122197
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcacttatacattt 239  Q
    |||||||| | ||||||||||| ||| || | ||||||  |||| || |||||| || | ||||||||||||||||||| |||| ||||||||||    
T  54122291 atatatttcactttgcatttatgatagtggagaatgcaccaatacttaacaaaaacatttaaaactatttttctctctccttcatttatacattt 54122197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35239685 - 35239713
Alignment:
Q  1 ttttagatacattgaataattaatgtatt 29  Q
    |||||||||||||||||||||||||||||    
T  35239685 ttttagatacattgaataattaatgtatt 35239713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 2195476 - 2195609
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| ||||||| |||||  ||||||| || ||||||||||| ||||  || ||||||  |||| || |||| ||| |||||||||||    
T  2195476 taattaatactactttcatcactcccaattcaatatattctactttgcatttatgataagaaagaatgcaccaatacttaacaagacactcaaaactatt 2195575  T
Q  214 tttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||||||||||||||||||| || |||||||    
T  2195576 tttctctctctttcacttatacactttttcttaa 2195609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 42412482 - 42412356
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | ||| ||||||| |||||  |||||||  | ||||||||||| |||||| | ||||||  ||||| |||||| | || | ||||||||    
T  42412482 taattaatactactttcatcactcccaattcaatatattccactttgcatttatgataatggagaatgcaccaatatatgacaagagcacttaaaactat 42412383  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    ||||||||||| |||||||||||||||    
T  42412382 ttttctctctcattcacttatacattt 42412356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 14689968 - 14690102
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactat 212  Q
    |||||||||| | ||| | ||||| |||||  ||||||| || ||||||||||| ||||  || ||||||  |||| |||| ||  ||| ||||||| ||    
T  14689968 taattaatactactttcaccactcccaattcaatatattctactttgcatttatgataaaaaagaatgcaccaatagttgataaggacactcaaaaccat 14690067  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||||||||||| || |||||||    
T  14690068 ttttctctctctttcacttatacactttttcttaa 14690102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 2797080 - 2797181
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttctt 245  Q
    ||||||| || ||||||||||| ||||  || ||||||| | ||  |||||||||| ||||||| |||||||||| |||||||||||| || || |||||    
T  2797080 atatattctactttgcatttatgataagtaagaatgcatcagtaaatgacaaaacactcaaaaccatttttctctttctttcacttattcactttttctt 2797179  T
Q  246 aa 247  Q
    ||    
T  2797180 aa 2797181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 429874 - 429830
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg 45  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  429874 ttttagatacattgaataatcaatgtattcagtcacatttatagg 429830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 10729021 - 10728886
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactat- 212  Q
    |||||||||| | ||| ||||||| |||||  |||||||  | ||||||||||| ||||  || ||||||  |||| || |||| ||| ||||||||||     
T  10729021 taattaatactactttaatcactcccaattcaatatattccactttgcatttatgataagaaagaatgcacaaatacttaacaagacactcaaaactatt 10728922  T
Q  213 -ttttctctctctttcacttatacatttcttcttaa 247  Q
     |||| ||||||||||||||||||| || |||||||    
T  10728921 tttttttctctctttcacttatacactttttcttaa 10728886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 27868425 - 27868298
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaacta 211  Q
    ||||||||||| | ||| |||| ||||||||  ||||||| || ||||||||||| ||||||| ||||| || |||| ||||||| ||||   ||||| |    
T  27868425 ttaattaatactactttcatcattctcaattcaatatattctactttgcatttatgataatgataaatggatcaatacttgacaagaacacgtaaaacca 27868326  T
Q  212 tttttctctctctttcacttatacattt 239  Q
    ||||||||  || |||||| ||||||||    
T  27868325 tttttctccatcattcactaatacattt 27868298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24185640 - 24185571
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgta 68  Q
    |||||| ||||||||||||||||||||| || |||||||||||||  | ||| |||||||||| ||||||    
T  24185640 ttttaggtacattgaataattaatgtatccagtcacatttataggttagatatattaattattcaatgta 24185571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 33743784 - 33743918
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactat 212  Q
    |||||||||  | ||| ||||||| |||||| ||||||| || |||| |||||| |||| ||| ||||||  |||| |||| ||  ||| ||||| | ||    
T  33743784 taattaatattactttcatcactcacaatttaatatattctactttgtatttatgataaagaagaatgcacaaatagttgataagtacactcaaacccat 33743883  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||||| ||||||| || |||||||    
T  33743884 ttttctctctctttcatttatacactttttcttaa 33743918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 14113321 - 14113249
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    |||||||||||||||||||||||||||| |  |||||||||| ||  | ||||||||||||||  ||||||||    
T  14113321 ttttagatacattgaataattaatgtatacggtcacatttatgggttagatacattaattattggatgtacct 14113249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 14748805 - 14748669
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaac--t 210  Q
    |||||||||| | ||| | || ||||||||  ||||||| || ||||||||||| |||| ||| |||||| ||||| |||| || | || ||||| |  |    
T  14748805 taattaatactactttcaccattctcaattcaatatattctactttgcatttatgataaagaagaatgcactaatagttgataagagcactcaaacccat 14748706  T
Q  211 atttttctctctctttcacttatacatttcttcttaa 247  Q
    |||| ||||||||||||||||||||| || |||||||    
T  14748705 atttctctctctctttcacttatacactttttcttaa 14748669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42158489 - 42158448
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttat 42  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  42158489 ttttagatacattgaataattaatgtatccagtcacatttat 42158448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 32231395 - 32231351
Alignment:
Q  203 tcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||    
T  32231395 tcaaaaccattttcctctctctttcacttatacattttttcttaa 32231351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 7258466 - 7258383
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa 197  Q
    |||||||||| | ||| ||||||| |||||  ||||||| || ||||||||||| ||||||| |||||||  |||| |||||||    
T  7258466 taattaatactactttcatcactcccaattcaatatattctagtttgcatttatgataatgataaatgcaccaatacttgacaa 7258383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8169015 - 8168945
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatag--gacatacattaattatttaatgtac 69  Q
    ||||| ||||||||||| |||||| ||| |||||||||||||||   | |||||||||||||| |||||||    
T  8169015 ttttatatacattgaatgattaatatatgcaatcacatttatagatcagatacattaattattcaatgtac 8168945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 36012029 - 36011970
Alignment:
Q  177 aaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttataca 236  Q
    |||||||| |||| ||||||| ||| ||||||| |||| ||| |||||||||||||||||    
T  36012029 aaatgcatcaatacttgacaagacactcaaaaccatttctctttctctttcacttataca 36011970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 5392057 - 5392183
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | ||| | ||||| |||||  |||||||  | ||||||||||| ||| || | ||||||  |||| ||||||||| || | ||||| ||    
T  5392057 taattaatactactttcaacactcccaattcaatatattccactttgcatttatgatagtggagaatgcaccaatacttgacaaaagcacttaaaaccat 5392156  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    ||||||||||| |||| ||||||||||    
T  5392157 ttttctctctccttcatttatacattt 5392183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 15559229 - 15559103
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||||| ||| |||||||  ||||  ||||||| || ||||||||||| ||||||  |||| ||  |||| ||||||| |||| | ||||  ||    
T  15559229 taattaataccactttcatcactcctaattcaatatattctactttgcatttatgataatggtaaatacaccaatacttgacaagaacacttaaaatcat 15559130  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    |||| |||||| |||||| ||||||||    
T  15559129 ttttgtctctccttcactaatacattt 15559103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 26570208 - 26570130
Alignment:
Q  157 tttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcacttata 234  Q
    ||||||||||| |||||||  ||||||| |||| ||||||||| || |||||| ||||| |||||||  ||||||||||    
T  26570208 tttgcatttatgataatgacgaatgcatcaatacttgacaaaatcactcaaaattatttctctctcttattcacttata 26570130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 45421006 - 45420904
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcacttatacatttcttct 244  Q
    |||||||||| ||||||||||| |||| ||| |||||   || | |||||||   || ||||| | |||||||||||||||||||||||||| || ||||    
T  45421006 atatattttactttgcatttatgataaagaagaatgctccaaaagttgacaagggcactcaaacccatttttctctctctttcacttatacactttttct 45420907  T
Q  245 taa 247  Q
    |||    
T  45420906 taa 45420904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 8418401 - 8418316
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa 199  Q
    |||||||||| | ||| |||||||||||||   |||||| || ||| ||||||| |||| ||| ||||||| |||| |||||||||    
T  8418401 taattaatactactttcatcactctcaattcagtatattctactttacatttatgataaagaataatgcatcaatacttgacaaaa 8418316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 32679043 - 32679112
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgca 183  Q
    |||||||||| | |||||  ||||||||||| |||||||||| ||| ||||||| |||| ||| ||||||    
T  32679043 taattaatactacttttacaactctcaatttaatatattttactttacatttatgataaagaataatgca 32679112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40737855 - 40737926
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    |||| ||||||||||||||||||||||| |  ||||||||| |||  | |||||||||||||| |||||||||    
T  40737855 tttttgatacattgaataattaatgtatccggtcacattta-aggtcagatacattaattattcaatgtacct 40737926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 44329189 - 44329261
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    ||||| |||||||||||||||||||||||   |||||||||| ||  | ||||||||||||||  ||||||||    
T  44329189 ttttaaatacattgaataattaatgtatttggtcacatttatgggttagatacattaattattggatgtacct 44329261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 18725916 - 18725992
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaata 189  Q
    ||||||||||  | ||| || ||||| ||||  ||||||| || ||| |||||||||||||||||||||||| ||||    
T  18725916 ttaattaatattactttcattactcttaattaaatatattctactttacatttataataatgaaaaatgcatcaata 18725992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 18733392 - 18733460
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatg 181  Q
    ||||||||||  | ||| || ||||| ||||  ||||||| || |||||||||||||||||||||||||    
T  18733392 ttaattaatattactttaattactcttaattaaatatattctactttgcatttataataatgaaaaatg 18733460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20694451 - 20694495
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg 45  Q
    |||||||||||||||||||||||| |||  | |||||||||||||    
T  20694451 ttttagatacattgaataattaatttatcaagtcacatttatagg 20694495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 26677180 - 26677208
Alignment:
Q  211 atttttctctctctttcacttatacattt 239  Q
    |||||||||||||||||||||||||||||    
T  26677180 atttttctctctctttcacttatacattt 26677208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 29451357 - 29451478
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||| ||| | ||| ||||| |||||||  ||||||| || |||| |||||| ||||  || ||| || ||||| |||||||||   |||||||||||    
T  29451357 taattagtactactttcatcaccctcaattcaatatattatactttggatttatgataagaaagaatacactaatacttgacaaaatgttcaaaactatt 29451456  T
Q  214 tttctctctctttcacttatacat 237  Q
    ||||||  ||||||| ||||||||    
T  29451457 tttctc--tctttcatttatacat 29451478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 38201450 - 38201363
Alignment:
Q  154 taatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctc--tctttcacttatacattt 239  Q
    |||||||||||||| ||||  |  ||||||  ||||||||| || ||| |||||| ||||||||||||  |||||||||| |||||||    
T  38201450 taatttgcatttatgataaaaatgaatgcacaaatatttgataagacattcaaaattatttttctctctatctttcacttttacattt 38201363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 43844893 - 43844857
Alignment:
Q  203 tcaaaactatttttctctctctttcacttatacattt 239  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  43844893 tcaaaaccatttttctctctcttttacttatacattt 43844857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 8149999 - 8150100
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttctt 245  Q
    ||||||| || ||||  ||||| |||||| ||||||||  |||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||    
T  8149999 atatattctactttgattttatgataatggaaaatgcacaaatatttgacaaaacacttaaaaccatttttctctctctttcacttatacattttttctt 8150098  T
Q  246 aa 247  Q
    ||    
T  8150099 aa 8150100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 43007921 - 43008024
Alignment:
Q  133 cactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcactt 231  Q
    |||||||||||  ||||||| ||||||  |||||| |||| ||||||||||  |||| |||||||| ||| ||||||||||||||| |||||||||||||    
T  43007921 cactctcaattcaatatattctaatttaaatttatgataaagaaaaatgcacaaatacttgacaaagacactcaaaactatttttccctctctttcactt 43008020  T
Q  232 atac 235  Q
    ||||    
T  43008021 atac 43008024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 2849263 - 2849389
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactat 212  Q
    |||||||||| | ||| | |||||||||||  ||||||| || ||| ||||||| |||| ||| ||||||  |||| |||||||| |||  |||||||||    
T  2849263 taattaatactactttcaccactctcaattcaatatattctactttacatttatgataaagaagaatgcaccaatacttgacaaagacacgcaaaactat 2849362  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    |||||||||||||||| ||||||||||    
T  2849363 ttttctctctctttcatttatacattt 2849389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 6697132 - 6697222
Alignment:
Q  157 tttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||||||| |||||||||||||||  ||||   ||||||||| | |||| ||||||||||| |||||||||||||||||| |||||||    
T  6697132 tttgcatttatgataatgaaaaatgcaccaatacacgacaaaacacttaaaattatttttctctttctttcacttatacattttttcttaa 6697222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 15996224 - 15996152
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||  | |||||||||||||| |||||||||    
T  15996224 ttttagatacattgaataattaatgtatccaatcacgtttataggtcagatacattaattattcaatgtacct 15996152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 40023794 - 40023693
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttctt 245  Q
    |||||||||| |||||||||||  ||| || ||||||  ||||||||||||| ||| ||||||| |||||||||||| ||||| ||||| |||| |||||    
T  40023794 atatattttactttgcatttatggtaaggagaaatgctctaatatttgacaagacactcaaaacaatttttctctctttttcaattatatattttttctt 40023695  T
Q  246 aa 247  Q
    ||    
T  40023694 aa 40023693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 36070113 - 36070239
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactat 212  Q
    |||||||||| | ||| |||||||||||||   |||||| || ||| | ||||| |||| ||| ||||||  ||||||||||||| ||| ||||||| ||    
T  36070113 taattaatactactttcatcactctcaattcagtatattctactttacgtttatgataaagaataatgcaccaatatttgacaaagacactcaaaaccat 36070212  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    ||| |||||||||||| ||||||||||    
T  36070213 tttcctctctctttcatttatacattt 36070239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 2842151 - 2842025
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||| | ||| |||||||| ||||  |||||||| | ||||||||||| ||| || | ||||||| |||| ||||||| |||| | || || ||    
T  2842151 taattaatactactttcatcactctaaattcaatatatttcactttgcatttatgatagtggagaatgcatcaatacttgacaataacacttaacaccat 2842052  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    ||||||||||| |||| ||||||||||    
T  2842051 ttttctctctccttcatttatacattt 2842025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 3667976 - 3667854
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||  | ||| |||||||||||||  ||||||| || ||| ||||||| ||||  || |||||| ||||| |||| || ||| |||||| ||||    
T  3667976 taattaatattactttcatcactctcaattcaatatattctactttacatttatgataagaaataatgcactaatacttgataagacactcaaaattatt 3667877  T
Q  214 tttctctctctttcacttataca 236  Q
    ||||||| | |||||||||||||    
T  3667876 tttctctttttttcacttataca 3667854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 33774099 - 33774009
Alignment:
Q  157 tttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||| ||| ||| || | ||| ||| |||| || |||| ||| |||||||||||||||||||||||||||||||||| || |||||||    
T  33774099 tttgcatctatgatagtggagaatacatcaatacttaacaagacactcaaaactatttttctctctctttcacttatacactttttcttaa 33774009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 34064223 - 34064345
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||  | ||| |||||||||||||  ||||||| || ||| ||||||| ||||  || ||||||  |||| || |||| ||| |||||||||||    
T  34064223 taattaatattactttcatcactctcaattcaatatattctactttacatttatgataagaaagaatgcaccaatacttaacaagacactcaaaactatt 34064322  T
Q  214 tttctctctctttcacttataca 236  Q
    ||||||||| ||||| |||||||    
T  34064323 tttctctctatttcatttataca 34064345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 32972027 - 32971983
Alignment:
Q  203 tcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  32972027 tcaaaaccatttttctctctctttcacttatacattttttcttaa 32971983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 14575064 - 14574994
Alignment:
Q  3 ttagatacattgaataattaatgtattcaatcacatttataggaca--tacattaattatttaatgtacct 71  Q
    ||||||||||| |||||||||||||| |||| || ||||| || ||  |||||||||||||||||||||||    
T  14575064 ttagatacatttaataattaatgtatccaataacgtttattggtcagatacattaattatttaatgtacct 14574994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 28333179 - 28333298
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||  | ||| ||||||| |||||  ||||||| || ||| ||||||| ||||  || ||||||| |||| || ||||  || |||||||||||    
T  28333179 taattaatattactttcatcactcccaattcaatatattctactttacatttatgataagaaataatgcatcaatacttaacaagtcactcaaaactatt 28333278  T
Q  214 tttctctctctttcacttat 233  Q
    ||||||||||||||| ||||    
T  28333279 tttctctctctttcatttat 28333298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 9658893 - 9658979
Alignment:
Q  161 catttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||| |||| | ||||||||  |||| || |||| ||| ||||||| ||||||||||||||||| ||| ||||||| |||||||    
T  9658893 catttatcataagggaaaatgcaccaatagttcacaagacactcaaaaccatttttctctctctttcgcttgtacattttttcttaa 9658979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 29997096 - 29996994
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttatacatttcttct 244  Q
    ||||||| || ||||||||||| |||| ||| ||||||  |||| || ||||  ||| ||||||| |||||||| ||||||||||||||||| || ||||    
T  29997096 atatattatactttgcatttatgataaagaagaatgcaccaataattaacaaggacattcaaaaccatttttctttctctttcacttatacactttttct 29996997  T
Q  245 taa 247  Q
    |||    
T  29996996 taa 29996994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 32346552 - 32346690
Alignment:
Q  140 aatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacattt 239  Q
    ||||| |||||||||| ||||||||||| |||| || |||||||   |||  ||||||  || |||||||||| | ||||| ||||||||||||  | ||    
T  32346552 aatttaatatattttactttgcatttatgataaggagaaatgcaccgataaatgacaagtcactcaaaactatctctctctgtctttcacttatttactt 32346651  T
Q  240 cttcttaa-attcatgaaatgaacacaatactcaattat 277  Q
     ||||||| ||   ||||||||||| |||||||||||||    
T  32346652 tttcttaatatgtgtgaaatgaacaaaatactcaattat 32346690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 10355834 - 10355701
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||  | ||||| || ||||||||  ||||||| || ||||||||||| |||| || |||||||  |||| |||| ||  ||| ||||||| ||    
T  10355834 taattaatattacttttaccattctcaattcaatatattctactttgcatttatgataaagagaaatgcaccaatagttgataaggacactcaaaaccat 10355735  T
Q  213 ttttctctctctttcacttatacatttcttctta 246  Q
    |||| |||||||| |||||||||| || ||||||    
T  10355734 ttttttctctcttacacttatacactttttctta 10355701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12810341 - 12810412
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||  | |||||||||||||| ||| |||||    
T  12810341 ttttagatacattgaataattaatgtattcggtcacattta-aggccagatacattaattattcaatatacct 12810412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 247
Target Start/End: Complemental strand, 37496497 - 37496361
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaacta- 211  Q
    ||||||||||| | ||| |||||||||||||  ||||||| || ||| ||||||| ||||  || ||||||  |||| || |||| | | |||||||||     
T  37496497 ttaattaatactactttcatcactctcaattcaatatattctactttacatttatgataagaaagaatgcacaaatacttaacaagatactcaaaactat 37496398  T
Q  212 -tttttctctctctttcacttatacatttcttcttaa 247  Q
     | | ||||||||||||||||||||| || |||||||    
T  37496397 ctctctctctctctttcacttatacactttttcttaa 37496361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 21446534 - 21446578
Alignment:
Q  203 tcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||| ||||||||||||||||||||||||||| || |||||||    
T  21446534 tcaaaattatttttctctctctttcacttatacaatttttcttaa 21446578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 39171159 - 39171263
Alignment:
Q  127 ttttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctcttt 226  Q
    |||||||||||| ||||| ||||||| || ||||||||||| |||||    ||||||| |||||||||||| ||| | || ||  ||||| || ||||||    
T  39171159 ttttatcactcttaatttaatatattatactttgcatttatgataattttgaatgcataaatatttgacaagacacttaagaccttttttttccctcttt 39171258  T
Q  227 cactt 231  Q
    |||||    
T  39171259 cactt 39171263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 47238315 - 47238359
Alignment:
Q  203 tcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||| |||||||||||||||||||||||||| || |||||||    
T  47238315 tcaaaaccatttttctctctctttcacttatacactttttcttaa 47238359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 32776010 - 32776125
Alignment:
Q  133 cactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactatttttctctctctttcactt 231  Q
    ||||| |||||  ||||||| || ||| ||||||| |||| ||| ||||||  |||| || |||||  || ||||||| ||||||||||||| |||||||    
T  32776010 cactcccaattcaatatattctactttacatttatgataaagaagaatgcaccaatacttaacaaaggcactcaaaaccatttttctctctccttcactt 32776109  T
Q  232 atacatttcttcttaa 247  Q
    ||||| || |||||||    
T  32776110 atacactttttcttaa 32776125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 23111156 - 23111054
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttatacatttcttct 244  Q
    ||||||| || ||| ||||||| |||| ||| ||||||  |||| |||| ||| ||| ||||||  |||||||||||| ||||| |||||||||| ||||    
T  23111156 atatattctactttacatttatgataaagaagaatgcaccaatagttgataaagacattcaaaatcatttttctctctatttcatttatacattttttct 23111057  T
Q  245 taa 247  Q
    |||    
T  23111056 taa 23111054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 5724774 - 5724681
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacattt 239  Q
    |||||||| | ||| ||||||| ||| || | |||||| ||||| || ||||  || | ||||||||||||||||||| |||| ||||||||||    
T  5724774 atatatttcactttacatttatgatagtggagaatgcactaatacttaacaaggcacttaaaactatttttctctctccttcatttatacattt 5724681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23097533 - 23097605
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtacct 71  Q
    |||||| ||||||||| ||||||||||| | |||||||||||| |  | |||||||||||||| ||| |||||    
T  23097533 ttttaggtacattgaacaattaatgtatcccatcacatttataagttaaatacattaattattcaatctacct 23097605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34670461 - 34670420
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttat 42  Q
    ||||| |||||||||||||||||||||| | |||||||||||    
T  34670461 ttttaaatacattgaataattaatgtatccgatcacatttat 34670420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40992839 - 40992767
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttataggacat--acattaattatttaatgtacct 71  Q
    ||||| ||||||||||||||||||| ||    ||||||||||| | |||  ||||||||||||||||||||||    
T  40992839 ttttaaatacattgaataattaatgcatctggtcacatttataagtcatgtacattaattatttaatgtacct 40992767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 26982796 - 26982824
Alignment:
Q  1 ttttagatacattgaataattaatgtatt 29  Q
    |||||||||||||||||||||||||||||    
T  26982796 ttttagatacattgaataattaatgtatt 26982824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 46095518 - 46095466
Alignment:
Q  115 aattaataccaattttatcactctcaatttcatatattttaatttgcatttat 167  Q
    ||||||||| | |||||||||||||||||  |||||||| | |||||||||||    
T  46095518 aattaatactacttttatcactctcaattcaatatatttcactttgcatttat 46095466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 15371962 - 15371829
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| | ||||| |||||  ||||||| || ||||||||||| |||| ||| |||||| ||||| |||| || ||| ||||||| |||    
T  15371962 taattaatactactttcaccactcccaattcaatatattctactttgcatttatgataaagaagaatgcactaatagttgataagacactcaaaaccatt 15371863  T
Q  214 tttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||| |||||||||||||| || |||||||    
T  15371862 tttctctcgctttcacttatacactttttcttaa 15371829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 28539004 - 28539129
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||||| ||| |||||| | ||||| ||||||| || |||||||||||||||| ||| | |||| ||||| || | || ||| |||||| ||||    
T  28539004 taattaataccactttcatcacttttaatttaatatattctactttgcatttataataaggaagattgcactaatacttaataagacattcaaaattatt 28539103  T
Q  214 tttctctctctttcacttatacattt 239  Q
    ||||| ||||||||| ||||||||||    
T  28539104 tttctttctctttcaattatacattt 28539129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 7739617 - 7739491
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | |||||||| ||||||||  |||| || || ||| ||||||||||||||   ||||||| |||| || |||||| || |  |||||||    
T  7739617 taattaatactacttttatcattctcaattcaatatcttctactttacatttataataatggtgaatgcatcaatacttaacaaaaacattttaaactat 7739518  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    |||||| ||||||||||||||||||||    
T  7739517 ttttctatctctttcacttatacattt 7739491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 3166175 - 3166084
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttataca 236  Q
    ||||||| || ||| ||||||| |||| ||||||| ||| |||| |||  ||| ||| |||||||||||||||||||||||||| |||||||    
T  3166175 atatattctactttacatttatgataaagaaaaatacatcaatacttgttaaagacactcaaaactatttttctctctctttcatttataca 3166084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 15355602 - 15355716
Alignment:
Q  133 cactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcactta 232  Q
    |||||||||||   |||||| || |||| |||||| |||| ||| ||||||  |||| |||| || ||| ||||||| | |||||||||| |||||||||    
T  15355602 cactctcaattcattatattctactttggatttatgataaagaagaatgcaccaatagttgataagacactcaaaaccaattttctctctttttcactta 15355701  T
Q  233 tacatttcttcttaa 247  Q
    |||| || |||||||    
T  15355702 tacactttttcttaa 15355716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 24252928 - 24252985
Alignment:
Q  11 attgaataattaatgtattcaatcacatttataggacatacattaattatttaatgtacct 71  Q
    ||||||||||||||||||||  ||||||||||||   |||||||||||||| |||||||||    
T  24252928 attgaataattaatgtattcggtcacatttatag---atacattaattattcaatgtacct 24252985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 26296317 - 26296248
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatag--gacatacattaattatttaatgta 68  Q
    ||||| ||||||||||||||||| |||| || ||||||||||||   | |||||||||||||||||||||    
T  26296317 ttttaaatacattgaataattaacgtatacagtcacatttatagattaaatacattaattatttaatgta 26296248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 20383882 - 20383971
Alignment:
Q  143 ttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcactta 232  Q
    |||||||||| || ||| ||||||  |||||||  ||||||  |||| ||||||| ||| ||||||| |||||| |||||||||||||||    
T  20383882 ttcatatattctatttttcatttaagataatgaggaatgcaccaatacttgacaagacactcaaaaccatttttttctctctttcactta 20383971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 31076019 - 31075890
Alignment:
Q  118 taataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttc 217  Q
    |||||| | ||| ||||||| |||||  ||||||| || |||| |||||| ||||  |  ||||||  |||| |||| || ||| |||| || |||||||    
T  31076019 taatactactttcatcactcccaattcaatatattatattttgtatttatgataagaaggaatgcaccaatagttgaaaagacactcaataccatttttc 31075920  T
Q  218 tctctctttcacttatacatttcttcttaa 247  Q
    |||||||||||||| ||||||| |||||||    
T  31075919 tctctctttcacttgtacattttttcttaa 31075890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 16260721 - 16260662
Alignment:
Q  11 attgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgta 68  Q
    ||||||||||||||||||||| |||||||||||||  | | |||||||||||| ||||||    
T  16260721 attgaataattaatgtattcagtcacatttataggttagagacattaattattcaatgta 16260662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8051086 - 8051043
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatag 44  Q
    |||| |||||||| ||||||||||||||| ||||||||||||||    
T  8051086 ttttggatacatttaataattaatgtatttaatcacatttatag 8051043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 15321324 - 15321191
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| | || ||||||||  ||||||| || ||||||||||| |||| ||| || |||  |||| || | || ||| | ||||| | |    
T  15321324 taattaatactactttcaacattctcaattcaatatattctactttgcatttatgataaagaagaacgcaccaatagtttataagacactgaaaaccaat 15321225  T
Q  214 tttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||||||||||| ||||||| || |||||||    
T  15321224 tttctctctctttcagttatacactttttcttaa 15321191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 15325155 - 15325288
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| | ||||||||||   ||||||| || ||||||||||  |||| ||| ||  ||  |||| |||| ||  || ||||||| | |    
T  15325155 taattaatactagtttcaccactctcaatccaatatattctactttgcatttacgataaagaagaacacaccaatagttgataaggcattcaaaaccaat 15325254  T
Q  214 tttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||||||||||||||||||| || |||||||    
T  15325255 tttctctctctttcacttatacactttttcttaa 15325288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 15351482 - 15351349
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| | | |||||||||  ||||||| ||  |||||||||| |||| ||| || |||| |||| |||| ||  || | ||||  | |    
T  15351482 taattaatactactttcaccgctctcaattcaatatattctaccttgcatttatgataaagaagaacgcatcaatagttgataaggcactaaaaatcaat 15351383  T
Q  214 tttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||| ||||||||||||||| |||||||    
T  15351382 tttctctctcattcacttatacattttttcttaa 15351349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 34803786 - 34803670
Alignment:
Q  134 actctcaatttcatatattttaatttgcatttat--aataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcact 230  Q
    ||||||||||  |||||||||| |||||||||||   |||| ||  ||||||| |||| |||| ||| ||| ||||||| ||||| |||||||||||  |    
T  34803786 actctcaattcaatatattttattttgcatttatgatataaagaggaatgcatcaatagttgataaagacactcaaaaccattttcctctctctttcctt 34803687  T
Q  231 tatacatttcttcttaa 247  Q
    |||||| || |||||||    
T  34803686 tatacactttttcttaa 34803670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 25344838 - 25344714
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    |||||||||| | ||| |||| ||||||||  ||||||| || ||| ||||||| ||||||   |||||| ||||||||||||| ||  | |||| ||||    
T  25344838 taattaatactactttcatcattctcaattcaatatattctactttacatttatgataatggtgaatgcactaatatttgacaacact-taaaaaatatt 25344740  T
Q  214 tttctctctctttcacttatacattt 239  Q
    ||||||||||||||||||||||||||    
T  25344739 tttctctctctttcacttatacattt 25344714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 6173080 - 6172954
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaa-aacagtcaaaactat 212  Q
    |||||||||| | ||| ||||||| |||||  ||||||| || ||||||||||| ||||||  |||||||||||||||||| || | || | ||||||||    
T  6173080 taattaatactactttcatcactcacaattcaatatattatactttgcatttatgataatggtaaatgcattaatatttgataagagcacttaaaactat 6172981  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    |||| |||||  |||||| ||||||||    
T  6172980 ttttatctcttcttcactaatacattt 6172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 32659837 - 32659946
Alignment:
Q  127 ttttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctcttt 226  Q
    ||||| || ||||||||  ||||||| || ||||||||||||||||| | |||||||| || |||| |||| ||| ||||||  |||||||| |||||||    
T  32659837 ttttaccagtctcaattcaatatattatactttgcatttataataataagaaatgcataaacatttaacaagacactcaaaatcatttttctttctcttt 32659936  T
Q  227 cacttataca 236  Q
    || |||||||    
T  32659937 catttataca 32659946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 14184148 - 14184018
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatt 213  Q
    ||||||||| || ||| || ||||||||||  ||||||| || ||  ||||||| ||||||   ||||| | |||||||||||| | | |||||||||||    
T  14184148 taattaatatcattttcattactctcaattcaatatattatactta-catttatgataatgtggaatgcctcaatatttgacaagaaactcaaaactatt 14184050  T
Q  214 tttc-tctctctttcacttatacatttcttct 244  Q
    |||  |||||||||||||||||||||||||||    
T  14184049 ttttatctctctttcacttatacatttcttct 14184018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 31196346 - 31196461
Alignment:
Q  133 cactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcactt 231  Q
    ||||||||||   ||||||| || ||||||| |||||||| ||||||||||  ||||  ||||||  ||| |||||||||||||||| ||||||||| ||    
T  31196346 cactctcaatccaatatattctactttgcatgtataataaagaaaaatgcagcaataaatgacaaggacactcaaaactatttttctatctctttcattt 31196445  T
Q  232 atacatttcttcttaa 247  Q
    |||||| | |||||||    
T  31196446 atacatattttcttaa 31196461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 31090312 - 31090446
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | ||| | ||||||||||| |||||||| || ||||| ||||| |||| ||| ||||||  |||| |||| ||   || ||||||  ||    
T  31090312 taattaatactactttcaacactctcaattccatatattctactttgcgtttatgataaagaagaatgcaccaatagttgataagggcactcaaaatcat 31090411  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||| |||||||||||||||| |||||||    
T  31090412 ttttctctctttttcacttatacattttttcttaa 31090446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 247
Target Start/End: Original strand, 35988641 - 35988775
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactat 212  Q
    |||||||||| || ||| | ||||| |||||  |||||||  | ||||||||||| ||||  |  ||||||  |||| ||||||| ||| | ||||||||    
T  35988641 ttaattaatatcactttcaccactcccaattcaatatattcaactttgcatttatgataagaatgaatgcaccaatacttgacaacacacttaaaactat 35988740  T
Q  213 ttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||||||| ||||||||||| |||| |||||||    
T  35988741 ttttctctctgtttcacttataaattttttcttaa 35988775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 6629476 - 6629362
Alignment:
Q  131 atcactctcaatttcatatattttaa-tttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcac 229  Q
    ||||||| |||||| ||||||||  | ||||||||||||||||  || ||||||  |||| ||||||| ||| ||||||||||||   |||||||||||     
T  6629476 atcactcccaatttaatatatttccactttgcatttataataaaaaagaatgcaccaatacttgacaagacactcaaaactattt---tctctctttcat 6629380  T
Q  230 ttatacatttcttcttaa 247  Q
    ||||||| || |||||||    
T  6629379 ttatacactttttcttaa 6629362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 35968776 - 35968851
Alignment:
Q  162 atttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttataca 236  Q
    ||||||||||| ||| |||| | ||||| |||||||| ||| |||||||||||||||| ||||||||| |||||||    
T  35968776 atttataataaagaagaatgtactaatacttgacaaagacactcaaaactatttttctttctctttcatttataca 35968851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 11099577 - 11099451
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaa-cagtcaaaactat 212  Q
    |||||||||| | ||| ||||||| |||||  |||||||  | |||| |||||| ||| || | ||||||  |||| || |||||| || | ||||||||    
T  11099577 taattaatactactttcatcactcccaattcaatatattccactttgtatttatgatagtggagaatgcaccaatacttaacaaaaacacttaaaactat 11099478  T
Q  213 ttttctctctctttcacttatacattt 239  Q
    |||||||||||||||| ||||||||||    
T  11099477 ttttctctctctttcatttatacattt 11099451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 18319968 - 18320050
Alignment:
Q  157 tttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcacttatacattt 239  Q
    |||||||||||||||||  |||||||| ||||| |||| || ||| ||||||  |||||| | ||||||||| ||||||||||    
T  18319968 tttgcatttataataatagaaaatgcactaatacttgataagacactcaaaaacatttttgtatctctttcaattatacattt 18320050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 15564903 - 15564859
Alignment:
Q  203 tcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    |||||| ||||||||||||||||||||||||||| || |||||||    
T  15564903 tcaaaattatttttctctctctttcacttatacactttttcttaa 15564859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 14509929 - 14509859
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg--acatacattaattatttaatgtac 69  Q
    ||||||||| |||||||||||||||||| |||||| ||||||  |  | |||||||||||||| |||||||    
T  14509929 ttttagatatattgaataattaatgtatccaatcatatttatgagttaaatacattaattattgaatgtac 14509859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 5147564 - 5147462
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttatacatttcttct 244  Q
    ||||||| || ||||||||||| |||| ||| ||||||  |||| |||| ||  ||| ||||||  |||||||||| ||||||||||||| |||| ||||    
T  5147564 atatattctactttgcatttatgataaagaagaatgcaccaatagttgataaggacactcaaaatcatttttctctttctttcacttatatattttttct 5147465  T
Q  245 taa 247  Q
    |||    
T  5147464 taa 5147462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 25111249 - 25111139
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaacta 211  Q
    ||||||||||| | ||| | ||||  |||||  ||||||| || ||| ||||||| |||| ||| ||||||  |||| |||||||| ||| |||||||||    
T  25111249 ttaattaatactactttcaccacttccaattcaatatattctactttacatttatgataaagaagaatgcagcaatacttgacaaagacactcaaaacta 25111150  T
Q  212 tttttctctct 222  Q
    |||||||||||    
T  25111149 tttttctctct 25111139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 25170340 - 25170230
Alignment:
Q  113 ttaattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaacta 211  Q
    ||||||||||| | ||| | ||||  |||||  ||||||| || ||| ||||||| |||| ||| ||||||  |||| |||||||| ||| |||||||||    
T  25170340 ttaattaatactactttcaccacttccaattcaatatattctactttacatttatgataaagaagaatgcagcaatacttgacaaagacactcaaaacta 25170241  T
Q  212 tttttctctct 222  Q
    |||||||||||    
T  25170240 tttttctctct 25170230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32522560 - 32522629
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatag--gacatacattaattatttaatgta 68  Q
    |||| |||| |||||||||||||||||| || ||||||||||||   | |||||||||||||| ||||||    
T  32522560 tttttgatatattgaataattaatgtatgcagtcacatttatagatcagatacattaattattcaatgta 32522629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 4438079 - 4438018
Alignment:
Q  186 aatatttgacaaaacagtcaaaactatttttctctctctttcacttatacatttcttcttaa 247  Q
    ||||||||||||| || | |||||||||||| ||||||||| |||| || |||| |||||||    
T  4438079 aatatttgacaaatcacttaaaactatttttatctctcttttacttctaaattttttcttaa 4438018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 858343 - 858403
Alignment:
Q  114 taattaataccaattttatcactctcaatttcatatattttaatttgcatttataataatg 174  Q
    |||||||||| | ||| |||||||||||||  |||||||| | ||||||||||| ||||||    
T  858343 taattaatactactttcatcactctcaattaaatatatttcattttgcatttatgataatg 858403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 8941341 - 8941389
Alignment:
Q  187 atatttgacaaaacagtcaaaactatttttctctctctttcacttatac 235  Q
    ||||||||||| ||| |||| || |||||||| ||||||||||||||||    
T  8941341 atatttgacaagacattcaacaccatttttctttctctttcacttatac 8941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 16883931 - 16883879
Alignment:
Q  212 tttttctctctctttcacttatacatttcttcttaa-attcatgaaatgaaca 263  Q
    ||||||||||||||||||| ||| |||| ||||||| || |||||||||||||    
T  16883931 tttttctctctctttcactcataaattttttcttaatatgcatgaaatgaaca 16883879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 20269550 - 20269522
Alignment:
Q  1 ttttagatacattgaataattaatgtatt 29  Q
    |||||||||||||||||||||||||||||    
T  20269550 ttttagatacattgaataattaatgtatt 20269522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30046415 - 30046371
Alignment:
Q  1 ttttagatacattgaataattaatgtattcaatcacatttatagg 45  Q
    |||||||||||||||||||||||||||| |   ||||||||||||    
T  30046415 ttttagatacattgaataattaatgtatccggccacatttatagg 30046371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 12503 - 12401
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttatacatttcttct 244  Q
    ||||||| || ||| |||||||||||| ||| |||||| ||||| |||||||| ||| ||||||| ||| ||| |||||||||| |||||| ||| ||||    
T  12503 atatattctactttacatttataataaagaagaatgcactaatacttgacaaagacactcaaaaccattattcactctctttcatttatacgttttttct 12404  T
Q  245 taa 247  Q
    |||    
T  12403 taa 12401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 592 - 706
Alignment:
Q  133 cactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaaacagtcaaaactatttttctctctctttcactta 232  Q
    |||||||||||   |||||| || |||| |||||| |||| ||| ||||||  |||| |||| || ||| ||||||| | |||||||||| |||||||||    
T  592 cactctcaattcattatattctactttggatttatgataaagaagaatgcaccaatagttgataagacactcaaaaccaattttctctctttttcactta 691  T
Q  233 tacatttcttcttaa 247  Q
    |||| || |||||||    
T  692 tacactttttcttaa 706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 6480 - 6373
Alignment:
Q  133 cactctcaatttcatatattttaatttgcatttataataatgaaaaatgcattaatatttgac-aaaacagtcaaaactatttttctctctctttcactt 231  Q
    |||||||||||  |||||||||| ||| ||||||| |||| ||| ||||||| |||| ||||| || ||| ||||||  || | ||||||||||||  ||    
T  6480 cactctcaattcaatatattttactttacatttatgataaagaagaatgcatcaatacttgactaagacactcaaaatcatctctctctctctttccttt 6381  T
Q  232 atacattt 239  Q
    ||||||||    
T  6380 atacattt 6373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 10858 - 10764
Alignment:
Q  146 atatattttaatttgcatttataataatgaaaaatgcattaatatttgacaaa-acagtcaaaactatttttctctctctttcacttatacattt 239  Q
    |||||||||| ||||||||||| |||| ||| |||| |  |||| |||| ||  ||| ||||| | |||||||||||||||||||||| ||||||    
T  10858 atatattttactttgcatttatgataaagaagaatgaaccaatagttgataaggacactcaaacccatttttctctctctttcacttacacattt 10764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University