View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15055_low_9 (Length: 431)
Name: NF15055_low_9
Description: NF15055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15055_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 43905506 - 43905767
Alignment:
| Q |
1 |
acacatcttattcttgcttttaatggcaaaacataagaatatactagtggtatataattgcatgcaaatacattttatttatttcactttactgtgactc |
100 |
Q |
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| T |
43905506 |
acacatcttattcttgcttttaatgccaaaacataagaatatactagtggtatataattgcatgcaaatacattttatttatttcactttactgtgactc |
43905605 |
T |
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| Q |
101 |
ttgaaaaagacactgaaaatggacattatcaaaggtttaacaaaaaataatatctccctnnnnnnngaatatgatgatcacatgaatggataaggaagat |
200 |
Q |
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| T |
43905606 |
ttgaaaaagacactgaaaatggacattatcaaaggtttaacaaaaaataatatctccctaaaaaaagaatatgatgatcacatgaatggataaggaagat |
43905705 |
T |
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| Q |
201 |
gaagagtatattttctaaagtagaaacgtaaaataaaagaaaaccacataatcctaattgcg |
262 |
Q |
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| T |
43905706 |
gaagagtatattttctaaagtagaaacgtaaaataaaaggaaaccacataatcctaattgcg |
43905767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 296 - 420
Target Start/End: Original strand, 43905801 - 43905925
Alignment:
| Q |
296 |
aatagttgcttaataatctatttgatctattattattggcaaaaataaaatcaatccatatcacacctccgttcttgaattttaacatacttttttggtc |
395 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43905801 |
aatacttgcttaataatctatttgatctattattattggcaaaaataaaatcaatccatatcacacctccgttcttgaattttaacatacttttttggtc |
43905900 |
T |
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| Q |
396 |
tataattttttacccaatcaatatt |
420 |
Q |
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| T |
43905901 |
tataattttttacccaatcaatatt |
43905925 |
T |
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