View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15056_high_1 (Length: 908)
Name: NF15056_high_1
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 10 - 477
Target Start/End: Complemental strand, 12146566 - 12146102
Alignment:
| Q |
10 |
agaagcaaagggcagattgacataagtgtgtaaaatatcaatgatcattatttttgcattacagcattttgttaaagataagaatgaattaattcaaagt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12146566 |
agaatcaaagggcagattgacataagtgtgtaaa-tatcaatgatcattatttttgcattacagcattttgttaaagataagaatgaattaattcgaagt |
12146468 |
T |
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| Q |
110 |
caaatattgtatgctctagcttgttctatttcttgctcaccttgactataaatacaacaacatttagtcacatccttttcatccatccatacgtataaaa |
209 |
Q |
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| T |
12146467 |
caaatattgtatgctctagcttgttctatttcttgctcaccttgactataaatacaacaacatttagtcacatccttttcatccatccatacgtataaaa |
12146368 |
T |
|
| Q |
210 |
tagataaagttttcacattgtgttagcaaaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctcagttctgctgagact |
309 |
Q |
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| T |
12146367 |
tagataaagttttcacattgtgttagcaaaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctcagttctgctgagact |
12146268 |
T |
|
| Q |
310 |
gcacccaaagacttggacaagaatcttgacaaccaagatggtaattaagtctattcataaataagttttaccatataacaattaattattattatttgta |
409 |
Q |
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| T |
12146267 |
gcacccaaagacttggacaagaatcttgacaaccaagatggtaattaagtctattcataattaagttttaccatataacaattaattattattatttgta |
12146168 |
T |
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| Q |
410 |
actcgtgatattttgatatagtatcatgcactttgaatgtttaggttagatcaaaagtagctagcata |
477 |
Q |
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| T |
12146167 |
actcgtgatagtttg--atagtatcatgcactttgaatgtttaggttagatcaaaagtagctagcata |
12146102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 499 - 888
Target Start/End: Complemental strand, 12146103 - 12145711
Alignment:
| Q |
499 |
taaaatatatgtgtaaaccttatattttaatctctagtaatcatatgttttgttttttaatatctgtagagttctatgaaacaaatggggtagatgaaag |
598 |
Q |
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| T |
12146103 |
taaaatatatgtgtaaaccttatattttaatttctagtaatcatatgttttgtttttcaatatttgtagagttctatgaaacaaatggggtagatgaaag |
12146004 |
T |
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| Q |
599 |
ccaatatgtaggcggtccatggcgtggtggtggaagtggttatggtggaggtggttacggcggaggacattacggcggacgatattgccatcacggttgc |
698 |
Q |
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| T |
12146003 |
ccaatatgtaggcggtccatggcgtggtggtggaagtggttatggtggaggtggttacggtggaggacattacggcggaagatattgtcatcacggttgc |
12145904 |
T |
|
| Q |
699 |
tgtgattggggctaccatggaagctgtagaaggtgctgctatcctcgtgaacatcatgttgctgatattgatgctgaacctcacaactaatcacaaagga |
798 |
Q |
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| T |
12145903 |
tgtgattggggctaccatggaagctgtagaaggtgctgctatcctcgtgaacatcatgttgctgatattgatgctgaacctcacaactaagcacaaagga |
12145804 |
T |
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| Q |
799 |
tagaaacttgtagtactaaaaagtctgaaagtgtgttcttctagtaata---ataagtatgaataaaacttcatgagaatatgaagtgtatgt |
888 |
Q |
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| T |
12145803 |
tagaaacttgtagtactaaaaagtctaaaagtgtgttcttctagtaataataataagtatgaataaaacttcatgagaatatgaagtgtatgt |
12145711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 12149470 - 12149561
Alignment:
| Q |
238 |
aaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctcagttctgctgagactgcacccaaagacttggacaa |
329 |
Q |
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| T |
12149470 |
aaaatgaattccaaggcgttactttttctagccatgttgttggcttccatccttctcatttgtgcagagtctgcacccaaagacttggacaa |
12149561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 12163953 - 12164045
Alignment:
| Q |
237 |
aaaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctcagttctgctgagactgcacccaaagacttggacaa |
329 |
Q |
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|||||||||||| |||||||||||||| ||||| ||| |||||||| |||||||||| | | ||| ||| |||||||||||||||||||||| |
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| T |
12163953 |
aaaaatgaattcaaaggctttacttttcctagccatgctgttggctaccatccttcttatatgtgcagagtctgcacccaaagacttggacaa |
12164045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 12182296 - 12182365
Alignment:
| Q |
238 |
aaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctcagttctgctgaga |
307 |
Q |
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| T |
12182296 |
aaaatgaattccaaagggttactttttcttactatgttgctggcttccatccttctcatctctgctgaga |
12182365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 12188301 - 12188370
Alignment:
| Q |
238 |
aaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctcagttctgctgaga |
307 |
Q |
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|||||||||||||| | ||||||||||| |||||||| |||||||||||||||||| |||||||||| |
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| T |
12188301 |
aaaatgaattccaaagggttactttttcttactatgttgctggcttccatccttctcatctctgctgaga |
12188370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 12175329 - 12175386
Alignment:
| Q |
238 |
aaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctca |
295 |
Q |
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|||||||||||||| | |||||||||||||||||| | ||||||||||| ||||||| |
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| T |
12175329 |
aaaatgaattccaaagggttactttttctagctatgctcttggcttccattcttctca |
12175386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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