View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15056_high_10 (Length: 289)
Name: NF15056_high_10
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_high_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 26235673 - 26235400
Alignment:
| Q |
16 |
aaaacgctatcattatttatgtctttgaagaattactttcaagctggactttgcctatttcctcatcatcaactttcatctccatgttcctctccttgca |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26235673 |
aaaacactatcattatttatgtctttgaagaattactttgaagctggactttgcctatttcctcatcatcaactttcatctccattttcctctccttgca |
26235574 |
T |
|
| Q |
116 |
atcattgaaataaataacacaagacacccattttagtatattcaccacagtaagaatccccactatcccaattaatagaaaaattccactgcctcccttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26235573 |
atcattgaaataaataacacaagacacccattttagtatattcaccacagtaagaatcccaactatcccaattaatagaaaaattccactgcctcctttg |
26235474 |
T |
|
| Q |
216 |
tagcatccaaagtagattcatattaaccttnnnnnnnctccataaacaaagaaaacaagcatcaaaacaagtcc |
289 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26235473 |
tagcatccaaagtagatacatattaaccttaaaaaaactccataaacaaagaaaacaagcatcaaaacaagtcc |
26235400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 37673175 - 37673066
Alignment:
| Q |
180 |
atcccaattaatagaaaaattccactgcctcccttgtagcatccaaagtagattcatattaaccttnnnnnnnctccataaacaaagaaaacaagcatca |
279 |
Q |
| |
|
||||||||| || |||||||||||| ||||| || |||||| |||||||||| || |||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
37673175 |
atcccaatttgtataaaaattccactccctcctttatagcattcaaagtagatacacattaacctcaaaacaccaccaaaaacaaagaaaacaagcatca |
37673076 |
T |
|
| Q |
280 |
aaacaagtcc |
289 |
Q |
| |
|
||||||||| |
|
|
| T |
37673075 |
taacaagtcc |
37673066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University