View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15056_high_13 (Length: 266)
Name: NF15056_high_13
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 8375065 - 8374807
Alignment:
| Q |
1 |
ttgagagctgaaaaaatttgtgtatgaattgtagatgagagtttattgttttannnnnnngataaaagatgagtgtttatgaaaacaatgaatgggagtg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8375065 |
ttgagagcttaaaaaatttgtgtatgaattgtagatgagagtttattgttttatttttttgataaaagatgagagtttatgaaaacaatgaatgggagtg |
8374966 |
T |
|
| Q |
101 |
agtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggccttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8374965 |
agtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggccttttt |
8374866 |
T |
|
| Q |
201 |
attgactttctatgtattctctaattaataaatttcaacaagtttggctgcctttgctt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8374865 |
attgactttctatgtattctctaattaataaatttcaacaagtttggctgccttggctt |
8374807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 8440070 - 8440230
Alignment:
| Q |
67 |
agatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatga |
166 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||| | |
|
|
| T |
8440070 |
agatgagagtttatgaaaacaatgaatgggagtgggtggtatatatatagatag-ggaagagaatggatcaaaactagaatagatgggaagaagtcacaa |
8440168 |
T |
|
| Q |
167 |
gcaaccgtaacattagattagacttggcctttttattgac-tttctatgtattctctaattaataaatt |
234 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
8440169 |
ctaaccgta-----agattagacttggcctttttattgacttttctatgtat--tctaattaataaatt |
8440230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8440038 - 8440083
Alignment:
| Q |
1 |
ttgagagctgaaaaaatttgtgtatgaattgtagatgagagtttat |
46 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8440038 |
ttgagagcttaaaaaatttgtgtatgaattgtagatgagagtttat |
8440083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University