View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15056_high_16 (Length: 204)

Name: NF15056_high_16
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15056_high_16
NF15056_high_16
[»] chr7 (2 HSPs)
chr7 (1-189)||(46028532-46028720)
chr7 (1-131)||(26557974-26558104)
[»] chr1 (2 HSPs)
chr1 (1-189)||(52372474-52372672)
chr1 (7-153)||(51871023-51871169)
[»] chr6 (4 HSPs)
chr6 (1-189)||(12834003-12834191)
chr6 (114-167)||(51921-51974)
chr6 (1-90)||(32470039-32470128)
chr6 (105-153)||(19290215-19290263)
[»] chr3 (1 HSPs)
chr3 (2-181)||(1762092-1762271)
[»] chr8 (3 HSPs)
chr8 (1-170)||(41926834-41927003)
chr8 (1-172)||(42241338-42241508)
chr8 (1-167)||(4040434-4040600)
[»] chr4 (4 HSPs)
chr4 (1-189)||(50655167-50655354)
chr4 (48-164)||(12843048-12843164)
chr4 (59-153)||(44616793-44616887)
chr4 (117-174)||(19469578-19469635)
[»] chr2 (2 HSPs)
chr2 (92-170)||(43411419-43411497)
chr2 (8-170)||(29682523-29682684)
[»] chr5 (3 HSPs)
chr5 (1-167)||(3465417-3465578)
chr5 (58-137)||(16154585-16154664)
chr5 (106-153)||(39774290-39774337)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 46028720 - 46028532
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46028720 aggtggttggggtgggagtttgtgatccctttaggtttagcccgacagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 46028621  T
Q  101 ttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtg 189  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46028620 ttactgtttggcatgctgttatttggaccatctgaacttcccggaatgaccttgttttttctgatggtgcccatagtgaggggtctgtg 46028532  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 26558104 - 26557974
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 100  Q
    ||||||||||| ||||| |||||||| ||  | || ||||||| |||||| |   |||||||||| |||||  |||||| | | |||||  ||||||| |    
T  26558104 aggtggttgggttgggattttgtgatgcccatggggttagcccagcagtttcaggcctttacgggtttaggaggggggaggagagttaggttaggtttgc 26558005  T
Q  101 ttactgtttggcgtgctgttatttggaccat 131  Q
    ||  |||||||| || |||||||||||||||    
T  26558004 ttcttgtttggcatgttgttatttggaccat 26557974  T

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Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 52372474 - 52372672
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 100  Q
    ||||||||||| ||| | ||| |||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  52372474 aggtggttgggttggaaatttttgatccctataggtttagcctgacagttcctttcctttaccgggttaggtagggggaagcgtgttagaatatgtttac 52372573  T
Q  101 ttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgtttt----------ttctggtggtgcccatagtgaggggtctgtg 189  Q
    ||| |||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||          ||||||||| |||||||||||||||||||||    
T  52372574 ttattgtttggcatgctattatttggaccatctggacctcccggaatgacctttttttcttcttcttcttctggtggcgcccatagtgaggggtctgtg 52372672  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 51871023 - 51871169
Alignment:
Q  7 ttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactg 106  Q
    ||||| |||||||||||||| ||| | ||  ||| || |||||| |   |||||||||| |||||| |||||| | | |||||  ||||||| |||  ||    
T  51871023 ttgggttgggagtttgtgatgcctcttgggctagtccagcagtttcaggcctttacgggtttaggtggggggacgagagttaggttaggtttgcttcttg 51871122  T
Q  107 tttggcgtgctgttatttggaccatctggacttcccggaatgacctt 153  Q
    |||||| ||||||||| |||||||| |||||  |||| |||||||||    
T  51871123 tttggcatgctgttatctggaccatttggacgacccgaaatgacctt 51871169  T

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Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 12834191 - 12834003
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 100  Q
    ||||||||||| ||||||||||| |||||| | ||| |||||| |||||||||||||||||| || |||||||||||||| ||||||||||||||||||     
T  12834191 aggtggttgggttgggagtttgtcatccctatgggtctagcccagcagttcctttcctttacaggtttaggtagggggaatcgtgttagaataggtttat 12834092  T
Q  101 ttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtg 189  Q
    ||| |||||||| |||||||||||||||||||||||  | ||||||||| ||| |||||||| ||||| ||| || ||||||| |||||    
T  12834091 ttattgtttggcatgctgttatttggaccatctggatgttccggaatgatcttattttttctagtggtacccttaatgaggggcctgtg 12834003  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 51921 - 51974
Alignment:
Q  114 tgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtgg 167  Q
    |||||||||||||||||||||||| ||||| ||||||||| | |||||||||||    
T  51921 tgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtgg 51974  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 32470039 - 32470128
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttaga 90  Q
    |||||||| || |||||||||||| |||| |||||| |||| |  |||||||| | |||||||||  |||| ||||||||||||||||||    
T  32470039 aggtggttaggttgggagtttgtggtccccttaggtctagctcaacagttcctgtactttacgggtctagggagggggaagcgtgttaga 32470128  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 19290215 - 19290263
Alignment:
Q  105 tgtttggcgtgctgttatttggaccatctggacttcccggaatgacctt 153  Q
    |||||| | |||||||||||| || |||||||| |||||||||||||||    
T  19290215 tgtttgacatgctgttatttgaacaatctggacatcccggaatgacctt 19290263  T

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Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 1762271 - 1762092
Alignment:
Q  2 ggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttact 101  Q
    |||||||||| |||||||||||||||||  ||||| |||| |  || ||||||||||||| | | |||| |||||||||||||||||||||| |||||||    
T  1762271 ggtggttgggttgggagtttgtgatccccataggtctagctcaacaattcctttcctttatgagtttagatagggggaagcgtgttagaatatgtttact 1762172  T
Q  102 tactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgagg 181  Q
    |  |||||||| || ||||||||||||||||||||| ||| ||||||| ||| |||||| |||||| | |||||||||||    
T  1762171 tcttgtttggcatgttgttatttggaccatctggacgtcctggaatgagcttattttttttggtggcgtccatagtgagg 1762092  T

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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 41926834 - 41927003
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 100  Q
    |||||||||||||||||||| || |||||  ||||| | ||||  |||||||| | ||||||||| |||||| | |||| | | | |||  ||||| | |    
T  41926834 aggtggttggggtgggagttagttatcccactaggtcttgcccaacagttcctgtactttacgggcttaggtggtgggaggagagctaggttaggtctgc 41926933  T
Q  101 ttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgc 170  Q
    ||   ||||||| |||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||    
T  41926934 ttctggtttggcatgctgttatttggaccatttggacttctcggaatgatcttattttttctggtggtgc 41927003  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 42241508 - 42241338
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 100  Q
    ||||||||||||||||||||||||   ||| | ||| |||||| |||||| |  ||||| ||||| |||||| |||||||| | |||||| ||||||| |    
T  42241508 aggtggttggggtgggagtttgtgtctcctatgggtctagcccagcagtttccgtccttcacgggattaggtggggggaagagcgttagactaggtttgc 42241409  T
Q  101 ttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgccc 172  Q
    | | |||||| | |||||||||||| ||||||||||| ||| | || ||||||  |||||||||||| ||||    
T  42241408 tcattgtttgacatgctgttatttgaaccatctggacatccagaaacgacctt-atttttctggtggcgccc 42241338  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 4040600 - 4040434
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 100  Q
    ||||||||| ||||||||||||||   ||| | ||| ||||||  ||||| || | ||| ||||| |||||| |||||||| |||||||  ||||||| |    
T  4040600 aggtggttgtggtgggagtttgtgtctcctatgggtctagcccaacagtttctgttcttcacgggattaggtggggggaagagtgttaggctaggtttgc 4040501  T
Q  101 ttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtgg 167  Q
    | | |||||||| || |||||| |||||||||||||| ||| | || |||||| |||||||||||||    
T  4040500 tcattgtttggcatgttgttatctggaccatctggacatccagaaacgaccttattttttctggtgg 4040434  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 50655354 - 50655167
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 100  Q
    ||||||||||| |||||||||||||| ||   |||| |||| |  |||||| | || |||||||| ||||| ||||||||| | |||||  ||||||| |    
T  50655354 aggtggttgggttgggagtttgtgattccccaaggtctagcacaacagttcatgtcttttacgggcttagg-agggggaagagagttaggttaggtttgc 50655256  T
Q  101 ttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtg 189  Q
    |    ||||||| |||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||  || |||| |||||||    
T  50655255 tcctggtttggcatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggcgccctcagagaggagtctgtg 50655167  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 12843164 - 12843048
Alignment:
Q  48 gttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaat 147  Q
    ||||||||  |||| ||| |||||  |||| ||| | ||||| |||||||| |||   ||||||| |  |||||| |||||||| |||||||||||||||    
T  12843164 gttcctttattttatgggcttaggagggggaaagagagttaggataggtttgcttctggtttggcattttgttatctggaccatttggacttcccggaat 12843065  T
Q  148 gaccttgttttttctgg 164  Q
    |||||| ||||||||||    
T  12843064 gaccttattttttctgg 12843048  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 44616887 - 44616793
Alignment:
Q  59 ttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgacctt 153  Q
    ||||||| |||||| |||||||||| |||||| ||||||| ||    |||| || || ||||||||||| ||||||||| | | |||||||||||    
T  44616887 ttacgggcttaggtggggggaagcgagttagattaggtttgctcctggttttgcctgttgttatttggatcatctggacgtgctggaatgacctt 44616793  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 19469578 - 19469635
Alignment:
Q  117 tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccat 174  Q
    |||||||||||||||||| |||||| |||||||| || | ||| ||||||| ||||||    
T  19469578 tgttatttggaccatctgaacttcctggaatgacattttatttgctggtggcgcccat 19469635  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 43411419 - 43411497
Alignment:
Q  92 taggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgc 170  Q
    |||||||||||   ||||| |||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||    
T  43411419 taggtttacttctggtttgacgtgctattatttggaccatctggacgtcccagaatgaccttgtgttttctggtggtgc 43411497  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 29682523 - 29682684
Alignment:
Q  8 tggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgt 107  Q
    |||| |||||||||||||| ||  | ||  |||||| |||||| | | ||||||||||||| || ||||||| | | |||||  ||||||| |||  |||    
T  29682523 tgggttgggagtttgtgatgccactggggctagcccagcagtttcatgcctttacggggttggg-agggggaggagagttaggttaggtttgcttcttgt 29682621  T
Q  108 ttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgc 170  Q
    ||||| || ||||||||||||||| ||| | ||||||||||||||| | ||| ||||||||||    
T  29682622 ttggcatgttgttatttggaccatttgggcgtcccggaatgaccttatctttgctggtggtgc 29682684  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 3465578 - 3465417
Alignment:
Q  1 aggtggttggggtgggagtttgtgatccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttac 100  Q
    ||||||||||||||||||||||||   ||| | ||| ||| ||||||||     ||||| ||||| |||||| |||||||| |||||||  |||||||||    
T  3465578 aggtggttggggtgggagtttgtgtctcctatgggtctagtccggcagtg----tccttcacgggattaggt-gggggaagagtgttaggctaggtttac 3465484  T
Q  101 ttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtgg 167  Q
    | |  ||||| | || ||||||||||||||||| ||| ||| | || |||||| |||||||||||||    
T  3465483 tcatcgtttgacatgttgttatttggaccatctagacatccagaaacgaccttattttttctggtgg 3465417  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 16154664 - 16154585
Alignment:
Q  58 tttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggac 137  Q
    |||||||||||||| ||||||||| | |||||  ||||||| |||  | |||||| |||| ||||||||||||| |||||    
T  16154664 tttacggggttaggaagggggaagagagttaggttaggtttgcttcttatttggcatgctattatttggaccatttggac 16154585  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 39774290 - 39774337
Alignment:
Q  106 gtttggcgtgctgttatttggaccatctggacttcccggaatgacctt 153  Q
    ||||||||| |||||||||||| ||||||||| |||||||| ||||||    
T  39774290 gtttggcgttctgttatttggatcatctggacgtcccggaacgacctt 39774337  T

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