View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15056_high_2 (Length: 749)
Name: NF15056_high_2
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 8 - 593
Target Start/End: Original strand, 34478099 - 34478691
Alignment:
| Q |
8 |
agaagcatagggaagcagagaggagaagaagggagagaataaatggtcaccttggaacattacgtggtcttgtggcttccactcatcaaaaggtatgttt |
107 |
Q |
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| T |
34478099 |
agaatcatagggaagcagagaggagaagaagggagagaataaatggtcaccttggaacattacgtggtcttgtggcttccactcatcaaaaggtatgttt |
34478198 |
T |
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| Q |
108 |
tgttccttctttttgttgtcagttttataatttcattctaattgtaagattggtttagaattttatcaatatattatatttgaaaagttatgattaatta |
207 |
Q |
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| T |
34478199 |
tgttccttctttttgttgtcagttttataatttcattctaattgtaagattggtttagaattttatcaatatattatatttgaaaagttatg----atta |
34478294 |
T |
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| Q |
208 |
aaatagcagattcttgcgtaaaaagtaaacatatgcagcaccggcacttcatattgaaggtgatatgtggttacatcaaatcactttcatttgcttaaat |
307 |
Q |
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| T |
34478295 |
aaatagcggattcttgcgtaaaaagtaaacatatgcagcaccggcacttcatattgaaggtggtatgtggttacatcaaatcactttcatttgcttaaat |
34478394 |
T |
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| Q |
308 |
tattacggatatctatcat-----------gtgtcggttatccgtgtctatattagtgtttctataaaatgcatgtgctgtggagatgagagagggaatt |
396 |
Q |
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| T |
34478395 |
tattacggatatctatcatgtgtcaatatcgtgtcggttatccgtgtttatattagtgtttctataaaatgcatgtgttgtggagatgagaaagggaatt |
34478494 |
T |
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| Q |
397 |
atagtagatttaatggaaagttgaaattgggtgaggaacagatatagttttggtttttgggtaaaccagattaagtttgaacaaacatgacaatacaagc |
496 |
Q |
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| T |
34478495 |
atagtagatttaatggaaagttgaaattgggtgaggaacaaatatagttttggtttttgggtaaaccagtttaagtttgaacaaacatgacaatacaagc |
34478594 |
T |
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| Q |
497 |
tttcaggtagaggttagaatgaaatataattgggtacctgagggaaaaatgaattgtcaagaagaagttatttttaattttgatactaaatagagtg |
593 |
Q |
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| T |
34478595 |
tttcaggtagaggttagaatgaaatataattgggtacctgagggaaaaatgaattgtcaagaagaagttatttttaattttgatactaaatagagtg |
34478691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 637 - 749
Target Start/End: Original strand, 34478728 - 34478840
Alignment:
| Q |
637 |
gaaatatgtgtaagttgcatacggtaaaaagtaaaagagatggagataaacacatgatattgcatatgtgtttctattttgttttttaaataaccgtgtt |
736 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
34478728 |
gaaatatgtgtaagttgcatacggtaaaaagtaaaagagatggagataaacacatgatattgcatatgtgtctctattttgatttttaaataacagtgtt |
34478827 |
T |
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| Q |
737 |
accaaccaatttt |
749 |
Q |
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| T |
34478828 |
accaaccaatttt |
34478840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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