View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15056_high_9 (Length: 301)
Name: NF15056_high_9
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 43653457 - 43653737
Alignment:
| Q |
1 |
tcaattcctataccatatacacacagtcaaattaatcttacattagtaccttagatcttggcaaataacttatagctgatagctgataactgataaacga |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
43653457 |
tcaattcctacaccatatacacacagtcaaattaatcttacattagtaccttagatcttggcaaataacttatagcggata-------actgataaacga |
43653549 |
T |
|
| Q |
101 |
gtttatagctgatagcacgttacctaagcttaaaaatagaagattttcttaacataggataaaattggtnnnnnnnttagcttcttacaagggaagaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |
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| T |
43653550 |
gtttatagctgatagcacgttacctaagcttaaaaatagaagattttcttaacaaaggataaaattggtaaaaaaattagcttctcacaagggaagaaag |
43653649 |
T |
|
| Q |
201 |
att--nnnnnnngtaccttattggccttgcttttttcaaggtattcttcaataacgccagcattagcagaagaatttgaggctgaaac |
286 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43653650 |
attaaaaaaaaagtaccttattggccttgcttttttcaaggtattcttcaataacgccagcattagcagaagaattggaggctgaaac |
43653737 |
T |
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