View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15056_low_10 (Length: 310)
Name: NF15056_low_10
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 19695847 - 19696141
Alignment:
| Q |
16 |
aaaacacagtcagcaaaaaataaacaacagaaggaatagaaataacactaagcataactctccaactaggcgacggcatcaaggatataatgaaaacaag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19695847 |
aaaacacagtcagcaaaaaataaacaacagaaggaatagaaataacactaagcataactctccaactaggcgatggcatcaaggatataatgaaaacaag |
19695946 |
T |
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| Q |
116 |
aatgtaagccaaaaacattccaacggaacaagaaaattgcggaagagtgttcaattgtcctcttatatcaggtggagctatctcagatatgtaaagagga |
215 |
Q |
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| T |
19695947 |
aatgtaagccaaaaacattccaacggaacaagaaaattgtggaagagtgttcaattgtcctcttatatcaggtggtgctatctcagatatgtaaagagga |
19696046 |
T |
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| Q |
216 |
ttaaaagtaacagcaagagcaacggcagcgcctttgataatccttgacaagagaataactgtaacattacgagcccatagcattaccaaacctcc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19696047 |
ttaaaagtaacagcaagagcaacggcagcgcctttgataatccttgacaagagaataactgtaacattacgagcccatagcattaccaaacctcc |
19696141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 9953019 - 9953310
Alignment:
| Q |
16 |
aaaacacagtcagcaaaaaataaacaacagaaggaatagaaataacactaagcataactctccaactaggcgacggcatcaaggatataatgaaaacaag |
115 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||| || ||| ||||| |
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| T |
9953019 |
aaaacacagccagcaaaaaataagcaacagaaggaatagaaataacacttagcataactctccaactaggtgatggcaacaaggacattgagaatacaag |
9953118 |
T |
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| Q |
116 |
aatgtaagccaaaaacattccaacggaacaagaaaattgcggaagagtgttcaattgtcctcttatatcaggtggagctatctcagatatgtaaagagga |
215 |
Q |
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|||||||||||||||||||||| | ||||||| ||| || | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9953119 |
aatgtaagccaaaaacattccaccagaacaagcaaactgagtaagagtgttcaattgtcctcttatatcaggtggtgctatctcagatatgtaaagagga |
9953218 |
T |
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| Q |
216 |
ttaaaagtaacagcaagagcaacggcagcgcctttgataatccttgacaagagaataactgtaacattacgagcccatagcattaccaaacc |
307 |
Q |
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| T |
9953219 |
ttaaaagtaacagcaagagcaatggcaacgccgccaattatcctcgacaagagaacaaccataacattaggagcccacaacattaccaaacc |
9953310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 30889362 - 30889177
Alignment:
| Q |
30 |
aaaaaataaacaacagaaggaatagaaataacactaagcataactctccaactaggcgacggcatcaaggatataatgaaaacaagaatgtaagccaaaa |
129 |
Q |
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||||||||| |||||||| |||| |||| || || |||||| |||||||||| || || ||||||||||||| |||||| | ||||||||||||| |
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| T |
30889362 |
aaaaaataagcaacagaatgaatggaaacaataccaagcatgcctctccaacttggtgaatccatcaaggatatagagaaaaccaagatgtaagccaaaa |
30889263 |
T |
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| Q |
130 |
acattccaacggaacaagaaaattgcggaagagtgttcaattgtcctcttatatcaggtggagctatctcagatatgtaaagagga |
215 |
Q |
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||||||| | || | ||||| |||||||| || | ||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
30889262 |
acattcccaaagaggatgaaaacataggaagagtattgagcaagcctcttatatcaggtggtgctatctcagatatgtagagagga |
30889177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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