View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15056_low_12 (Length: 289)
Name: NF15056_low_12
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_low_12 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 26235673 - 26235400
Alignment:
| Q |
16 |
aaaacgctatcattatttatgtctttgaagaattactttcaagctggactttgcctatttcctcatcatcaactttcatctccatgttcctctccttgca |
115 |
Q |
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| T |
26235673 |
aaaacactatcattatttatgtctttgaagaattactttgaagctggactttgcctatttcctcatcatcaactttcatctccattttcctctccttgca |
26235574 |
T |
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| Q |
116 |
atcattgaaataaataacacaagacacccattttagtatattcaccacagtaagaatccccactatcccaattaatagaaaaattccactgcctcccttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
26235573 |
atcattgaaataaataacacaagacacccattttagtatattcaccacagtaagaatcccaactatcccaattaatagaaaaattccactgcctcctttg |
26235474 |
T |
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| Q |
216 |
tagcatccaaagtagattcatattaaccttnnnnnnnctccataaacaaagaaaacaagcatcaaaacaagtcc |
289 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26235473 |
tagcatccaaagtagatacatattaaccttaaaaaaactccataaacaaagaaaacaagcatcaaaacaagtcc |
26235400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 37673175 - 37673066
Alignment:
| Q |
180 |
atcccaattaatagaaaaattccactgcctcccttgtagcatccaaagtagattcatattaaccttnnnnnnnctccataaacaaagaaaacaagcatca |
279 |
Q |
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||||||||| || |||||||||||| ||||| || |||||| |||||||||| || |||||||| | ||| ||||||||||||||||||||| |
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| T |
37673175 |
atcccaatttgtataaaaattccactccctcctttatagcattcaaagtagatacacattaacctcaaaacaccaccaaaaacaaagaaaacaagcatca |
37673076 |
T |
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| Q |
280 |
aaacaagtcc |
289 |
Q |
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| T |
37673075 |
taacaagtcc |
37673066 |
T |
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