View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15056_low_13 (Length: 284)
Name: NF15056_low_13
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 37903033 - 37903289
Alignment:
| Q |
18 |
cattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcat |
117 |
Q |
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| T |
37903033 |
cattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcat |
37903132 |
T |
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| Q |
118 |
aagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataat |
217 |
Q |
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| T |
37903133 |
aagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataat |
37903232 |
T |
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| Q |
218 |
ttgggagaaaacttactcgcccttgcatcttctcttccaatctttttaacgcctttg |
274 |
Q |
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| T |
37903233 |
ttgggagaaaacttactcgcccttgcatcttctcttccaatctttttaacgtctttg |
37903289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 37909544 - 37909800
Alignment:
| Q |
18 |
cattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909544 |
cattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcat |
37909643 |
T |
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| Q |
118 |
aagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909644 |
aagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataat |
37909743 |
T |
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| Q |
218 |
ttgggagaaaacttactcgcccttgcatcttctcttccaatctttttaacgcctttg |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37909744 |
ttgggagaaaacttactcgcccttgcatcttctcttccaatctttttaacgtctttg |
37909800 |
T |
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