View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15056_low_3 (Length: 501)
Name: NF15056_low_3
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 8428821 - 8428463
Alignment:
| Q |
1 |
gatttgatttagatcaattcatgtgtgttattgttatgttatttaaatgtttaagagaaatttgagttacactatcaactttgtgagatgatatttgagt |
100 |
Q |
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| T |
8428821 |
gatttgatttagatcaattcatgtgtgttattgttatgttatttaaatgtttaagagaaatttgagttacactatgaactttgtgagatgatatttgagt |
8428722 |
T |
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| Q |
101 |
gctataaaaatgaacaattaggtataaaaatgattaaactttaagattagaaggataaaaaggtaaataacttcttaaacctttccccttccattatgaa |
200 |
Q |
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| T |
8428721 |
gctataaaaatgaacaattaggtataaaaatgattaaactttaagattagaaggataaaaaggtaaataagttcttaaacctttcccctcccattatgaa |
8428622 |
T |
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| Q |
201 |
tcaaacaatgtttaattaaagttcgttaagtttactatccttatttcttatcccgattttccccttcattaaaatctctctcattccttcattacatcaa |
300 |
Q |
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| T |
8428621 |
tcaaacaatgtttaattaaagttcgttaagtttactatccttatttcttatcccgattttccccttcattaaaatctctctcattccttcattacatcaa |
8428522 |
T |
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| Q |
301 |
aacaaacccttaacaaaggaaagtaacccggtagtagaaatgcgaaaagtatgtgagta |
359 |
Q |
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| T |
8428521 |
aacaaacccttaacaaaggaaagtaacccggtagtagaaatgcgaaaagtatgtgagta |
8428463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 8428420 - 8428363
Alignment:
| Q |
402 |
atatatggaaggagacttacatagaaccggtgagctatgctcattgttgtcacaggtt |
459 |
Q |
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| T |
8428420 |
atatatggaaggagacttacatagaaccggtgagctatgctcattgttgtcacaggtt |
8428363 |
T |
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