View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15056_low_5 (Length: 451)
Name: NF15056_low_5
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 45402921 - 45402495
Alignment:
| Q |
17 |
atttacattgcggggagcctatgtttatacataaagatgggggcagcctgttatttatattatctactcgctgacatcatctctattctatttcaaatgc |
116 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45402921 |
atttacattgcggggagcctatgtttatatataaagacagggg-agcctgctatatatattatctactcgctgacatcatctctattctatttcaaatgc |
45402823 |
T |
|
| Q |
117 |
tatgctatgcttg-----tagcaagtctttagacatatacttgaaacatactgataggaacttgaaacatgaaattacttacaatatcttcaaattttgt |
211 |
Q |
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|||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45402822 |
tatgct-tgtttcaaatttagcaagtctttagacatatacttgaaacatattgataggaacttgaaacatgaaatcacttacaatatcttcaaattttgt |
45402724 |
T |
|
| Q |
212 |
atattatactgcaaggttataaaatatccggttaggctctatccatgatttttgttgcagggatagagaccaggtaatgtttgtgagtagcattatgata |
311 |
Q |
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| T |
45402723 |
agattatactgcaaggttataaaatatccggttaggctctatccatgatttttgttgcaaggatagagaccaggtaatgtttgtgagtagcattatgata |
45402624 |
T |
|
| Q |
312 |
aaaaatagtagggtgtattatgattagactacgtgcatataataatctaataaagtggactacaacactttttaactccctgccaccaatattttaccct |
411 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45402623 |
aaaaatagtagggtgtattacgattagactacgtgcatataataatctaataatgtggactacaacactttttaactccctgccaccaatattttaccct |
45402524 |
T |
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| Q |
412 |
ataatctgagaaaattctagttcacctat |
440 |
Q |
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| T |
45402523 |
ataatatgagaaatttctagttcacctat |
45402495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 19611873 - 19611706
Alignment:
| Q |
17 |
atttacattgcggggagcctatgtttatacataaagatgggggcagcctgttatttatattatctactcgctgacatcatctctattctatttcaaatgc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19611873 |
atttacattgcggggagcctatgtttatacataaagacggggggagcctggtatttatattatctactccctgacatcatctctattctatttcaaatgc |
19611774 |
T |
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| Q |
117 |
tatgctatgct----tgtagcaagtctttagacatatacttgaaacatactgataggaacttgaaaca |
180 |
Q |
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| T |
19611773 |
tatgcttgtatcaaatttagcaagtctttagacatatacttgaaacatactgataggaacttgaaaca |
19611706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 19611709 - 19611644
Alignment:
| Q |
375 |
aacactttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctat |
440 |
Q |
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| T |
19611709 |
aacactttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctat |
19611644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 327 - 440
Target Start/End: Complemental strand, 23362196 - 23362083
Alignment:
| Q |
327 |
tattatgattagactacgtgcatataataatctaataaagtggactacaacactttttaactccctgccaccaatattttaccctataatctgagaaaat |
426 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23362196 |
tattacgattagactacgtgcatataataatctaataatgtggactacaacactttttaactccctgccaccaatattttaccctataatctgagaaaat |
23362097 |
T |
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| Q |
427 |
tctagttcacctat |
440 |
Q |
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|||||||||||||| |
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| T |
23362096 |
tctagttcacctat |
23362083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 7600460 - 7600398
Alignment:
| Q |
378 |
actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctat |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7600460 |
actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctat |
7600398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 28462062 - 28462124
Alignment:
| Q |
378 |
actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctat |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28462062 |
actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctat |
28462124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 22557292 - 22557342
Alignment:
| Q |
170 |
aacttgaaacatgaaattacttacaatatcttcaaattttgtatattatac |
220 |
Q |
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||||| |||||| ||||||| |||||||||||||||||||||| ||||||| |
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| T |
22557292 |
aacttcaaacataaaattacatacaatatcttcaaattttgtagattatac |
22557342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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