View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15056_low_7 (Length: 391)
Name: NF15056_low_7
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15056_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 41340311 - 41339939
Alignment:
| Q |
18 |
caagacaaaatcaacaatatctttaaattgtgcaaaatgataaatctgtcacattctacattctcat------gaacctgaagaataattgttggaacct |
111 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
41340311 |
caagacaaaatcaacaatatctttaacttgtgcaaaatgataaatctgtcacattctacattctcattctcatgaacctgacgaataattgttggaacct |
41340212 |
T |
|
| Q |
112 |
atactcatgggaattagccaaccagaatttcaataggggacagatggattgcccggatttatcca-tgagaacaaaagattnnnnnnngacaacgataaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
41340211 |
atactcatgggaattagccaaccagaatttcaataggggacagatggattgcccggatttatccagtgagaacaaaagattaaaaaaagacaacgataaa |
41340112 |
T |
|
| Q |
211 |
ttgaccggtgaattggcacttgcgaagaagtggtgcgacaagttagtagcttttctacaggacattgtcaatgtgggatcagatcatcagattaaccgca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41340111 |
ttgaccggtgaattggcacttgcgaagaagtggtgcgacaagttagtagcttttctacaggacattgtcaatgtgggatcagatcatcagattaaccgca |
41340012 |
T |
|
| Q |
311 |
tcatcgacaaaggacaagtgggttgcgttttgatgatgacaacattgcaataggtgaatgtagagcctttgtt |
383 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41340011 |
tcatcgacaaaggacaagtgggttacattttgatgatgacaacattgcaataggtgaatgtagagcctttgtt |
41339939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 167 - 383
Target Start/End: Complemental strand, 36137712 - 36137483
Alignment:
| Q |
167 |
gatttatccat-gagaacaaaagattnnnnnnngacaacgataaattgaccggtgaattggcacttgcgaagaagtggtgcgacaagttagtagcttttc |
265 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
36137712 |
gatttatccattgagaacaaaagattaaaaaaagacaacgagaaattgaaaggtgaatcggcacttgcgaagaagtagtgcaacaagttagtagcttttc |
36137613 |
T |
|
| Q |
266 |
tacaggacattgtcaatgtgggatcagatcatcagattaaccgcatcatcgacaaaggacaagtgggt---------------tgcgttttgatgatgac |
350 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |||| |||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
36137612 |
tacaggacattgtcaatgtgggaccag---atcagattaattgcatgatcgacaagagacaagtgggtccatccctgacgtggtgcgtttggatgatgac |
36137516 |
T |
|
| Q |
351 |
aacattgcaataggtgaatgtagagcctttgtt |
383 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
36137515 |
aatattgcaataggtgaatgtagagcctttgtt |
36137483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 36137995 - 36137855
Alignment:
| Q |
19 |
aagacaaaatcaacaatatctttaaattgtgcaaaatgataaatctgtcacattctacattctcatgaacctgaagaataattgttggaacctatactca |
118 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| | || |
|
|
| T |
36137995 |
aagacataattaacaatatctttaacttgtgcaaaatgataaatctgtcacattctacattctcatgaacctgaccaataactgctggaacctatgcaca |
36137896 |
T |
|
| Q |
119 |
tgggaattagccaaccagaatttcaataggggacagatgga |
159 |
Q |
| |
|
|||||||| ||| || |||||||||| | ||||||||||| |
|
|
| T |
36137895 |
tgggaatttgcctactagaatttcaagtgaggacagatgga |
36137855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University