View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15056_low_8 (Length: 380)

Name: NF15056_low_8
Description: NF15056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15056_low_8
NF15056_low_8
[»] chr7 (9 HSPs)
chr7 (247-380)||(46028422-46028555)
chr7 (99-194)||(46028274-46028369)
chr7 (247-361)||(40188169-40188283)
chr7 (269-358)||(12258376-12258465)
chr7 (253-370)||(23176890-23177007)
chr7 (299-370)||(33888605-33888676)
chr7 (257-359)||(33743472-33743574)
chr7 (299-370)||(26557858-26557929)
chr7 (100-185)||(19513534-19513620)
[»] chr1 (11 HSPs)
chr1 (247-377)||(52372652-52372782)
chr1 (247-361)||(25410555-25410669)
chr1 (257-359)||(51871203-51871305)
chr1 (247-370)||(40799640-40799763)
chr1 (247-370)||(44503937-44504060)
chr1 (247-358)||(9644372-9644483)
chr1 (299-370)||(21926608-21926678)
chr1 (268-358)||(13297595-13297685)
chr1 (130-194)||(52372835-52372900)
chr1 (264-344)||(3227649-3227729)
chr1 (255-359)||(15274347-15274451)
[»] chr8 (12 HSPs)
chr8 (247-362)||(42032730-42032845)
chr8 (99-194)||(42032899-42032992)
chr8 (253-370)||(34152007-34152124)
chr8 (253-361)||(41927018-41927126)
chr8 (257-359)||(24604837-24604939)
chr8 (262-350)||(32073929-32074017)
chr8 (257-359)||(2074795-2074897)
chr8 (253-358)||(42241217-42241322)
chr8 (292-359)||(36650457-36650524)
chr8 (319-361)||(38492761-38492803)
chr8 (294-354)||(4040348-4040408)
chr8 (310-370)||(7656846-7656906)
[»] chr2 (4 HSPs)
chr2 (256-363)||(43411510-43411617)
chr2 (264-359)||(10994432-10994527)
chr2 (247-361)||(41074545-41074658)
chr2 (302-359)||(29682701-29682758)
[»] chr4 (9 HSPs)
chr4 (253-370)||(30251386-30251503)
chr4 (255-361)||(45068115-45068221)
chr4 (247-344)||(50655057-50655154)
chr4 (247-360)||(19469647-19469759)
chr4 (247-359)||(23012323-23012435)
chr4 (262-361)||(24065097-24065196)
chr4 (300-344)||(4866794-4866838)
chr4 (299-359)||(48309657-48309717)
chr4 (254-358)||(12842920-12843024)
[»] chr3 (7 HSPs)
chr3 (265-370)||(26982031-26982136)
chr3 (257-361)||(4778030-4778134)
chr3 (255-359)||(2833286-2833394)
chr3 (253-361)||(34213146-34213254)
chr3 (257-359)||(41640824-41640926)
chr3 (299-359)||(1045406-1045466)
chr3 (312-353)||(1762039-1762080)
[»] chr5 (4 HSPs)
chr5 (301-360)||(41650524-41650583)
chr5 (253-355)||(33861926-33862027)
chr5 (260-376)||(27639444-27639560)
chr5 (316-368)||(3465354-3465406)
[»] scaffold0329 (1 HSPs)
scaffold0329 (247-360)||(18408-18521)
[»] chr6 (4 HSPs)
chr6 (271-358)||(51995-52082)
chr6 (254-364)||(9557358-9557468)
chr6 (299-359)||(9755699-9755759)
chr6 (306-369)||(12833951-12834015)
[»] scaffold0042 (1 HSPs)
scaffold0042 (299-358)||(83252-83311)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 247 - 380
Target Start/End: Original strand, 46028422 - 46028555
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46028422 taccgttgccaacaaagaacgggctgcacctcccacttataaaaggagtagaaactagcaggacacttagccaggaaccacttccaagctaagagtttcg 46028521  T
Q  347 ctctatccaccacagacccctcactatgggcacc 380  Q
    ||||||||||||||||||||||||||||||||||    
T  46028522 ctctatccaccacagacccctcactatgggcacc 46028555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 46028274 - 46028369
Alignment:
Q  99 tggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaggctggataggtagaggcaaag 194  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  46028274 tggcccccggaaagggttccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaagttggataggtagaggcaaag 46028369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 40188169 - 40188283
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||| |||||||| | |||| ||||||||||| || ||| | | | |||  |||||||||||||||||| || ||||||||||||||||| |||||| |    
T  40188169 taccgctgccaacacaagacgagctgcacctcctactcatgataagtgcaagaactagcagggcacttaggcaagaaccacttccaagctatgagttttg 40188268  T
Q  347 ctctatccaccacag 361  Q
    || ||||||||||||    
T  40188269 ctttatccaccacag 40188283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 358
Target Start/End: Complemental strand, 12258465 - 12258376
Alignment:
Q  269 gctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccacca 358  Q
    |||||||||||||| |||| |  ||||||  ||| ||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  12258465 gctgcacctcccactcatagagagagcagggactggcaggacacttagccaggaaccactttcaagctaagagtttaactctatccacca 12258376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 370
Target Start/End: Original strand, 23176890 - 23177007
Alignment:
Q  253 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 352  Q
    |||||||| |||||||||||||||||| || ||| | | | |||  |||||||| | ||||| || ||||||| ||||||||||||||||||| ||||||    
T  23176890 tgccaacataggacgggctgcacctccaactcatgataagtgcatgaactagcatgacacttggcaaggaaccgcttccaagctaagagtttcactctat 23176989  T
Q  353 ccaccacagacccctcac 370  Q
     |||||||| | ||||||    
T  23176990 acaccacaggctcctcac 23177007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 33888676 - 33888605
Alignment:
Q  299 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcac 370  Q
    |||||||||||||||||||| | |||||||||||| ||||||||| | ||||||||||||| ||| ||||||    
T  33888676 aactagcagggcacttagcccgaaaccacttccaatctaagagttccactctatccaccactgactcctcac 33888605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 33743574 - 33743472
Alignment:
Q  257 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 356  Q
    |||| |||||||| |||||||||||| |||| |  || |||  |||||||||||||||||||| ||||||||| |||||||||| |||  |||| |||||    
T  33743574 aacacaggacgggttgcacctcccactcatagagagaacagggactagcagggcacttagccaagaaccactttcaagctaagattttaactctgtccac 33743475  T
Q  357 cac 359  Q
    |||    
T  33743474 cac 33743472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 26557858 - 26557929
Alignment:
Q  299 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcac 370  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||  |||| |||||||||| | ||||||    
T  26557858 aactagcagggcacttagccaggagccactaccaagctaaaagtttaactctgtccaccacaggctcctcac 26557929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 19513620 - 19513534
Alignment:
Q  100 ggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaa-gcgcaaggagagacccaagaagacaggctggataggta 185  Q
    ||||||| ||||||| |||| || | | ||| |||||| ||||||||| |||||||||||||||||||||||||||  |||||||||    
T  19513620 ggcccccagaaagggacccgccataccaagcgcacccaacaaggaaaaagcgcaaggagagacccaagaagacaggtcggataggta 19513534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 247 - 377
Target Start/End: Complemental strand, 52372782 - 52372652
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||| ||||||||||||| ||| |||||||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  52372782 taccgctgccaacaaaggatgggttgcacctcccactcataaaaagagcaggaactagcagggcacctagccaggaaccacttctaagctaagagtttcg 52372683  T
Q  347 ctctatccaccacagacccctcactatgggc 377  Q
    |||||||||||||||||||||||||||||||    
T  52372682 ctctatccaccacagacccctcactatgggc 52372652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 25410555 - 25410669
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    |||||||| ||||| | ||||||||||||||||||| |||| || |||||| |||||||| || |||||||||||||||||||||||||||||||||||     
T  25410555 taccgttggcaacacaagacgggctgcacctcccactcatagaaagagcaggaactagcaaggtacttagccaggaaccacttccaagctaagagtttca 25410654  T
Q  347 ctctatccaccacag 361  Q
    ||||||||| |||||    
T  25410655 ctctatccatcacag 25410669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 51871305 - 51871203
Alignment:
Q  257 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 356  Q
    |||| ||||||||||||||||||||| |||| |  || ||| |||||||||||||||||| |||||||||||||||||||||||||||   |||||||||    
T  51871305 aacacaggacgggctgcacctcccactcatagagagaacaggaactagcagggcacttagtcaggaaccacttccaagctaagagtttaattctatccac 51871206  T
Q  357 cac 359  Q
    |||    
T  51871205 cac 51871203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 40799763 - 40799640
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||| ||||| ||||||||| |||||||||||||| ||| ||| |||||  ||||||||  ||||||||| |||||| |||| ||||| |||||||||     
T  40799763 taccgatgccagcaaaggacgagctgcacctcccactcatgaaaagagcaagaactagcaatgcacttagctaggaacaactttcaagccaagagtttca 40799664  T
Q  347 ctctatccaccacagacccctcac 370  Q
    ||||||||||||||| | ||||||    
T  40799663 ctctatccaccacaggctcctcac 40799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 370
Target Start/End: Original strand, 44503937 - 44504060
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||| ||||| ||||||||| |||||||||||||| ||| ||| |||||| ||||| || | ||||||| || ||||||||||||||||||||| |||     
T  44503937 taccggtgccagcaaaggacgagctgcacctcccactcatgaaaagagcaggaactaccacgacacttagtcatgaaccacttccaagctaagagcttca 44504036  T
Q  347 ctctatccaccacagacccctcac 370  Q
    || |||||||||||| | ||||||    
T  44504037 ctttatccaccacaggctcctcac 44504060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 9644483 - 9644372
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||| ||||| ||||||||| | || ||||||||  ||| |||||||||  |||||| ||| |||||||| ||||||||||||||| | ||||||||||    
T  9644483 taccgatgccagcaaaggacgagatgtacctcccattcatgaaaggagcaagaactagtaggacacttagctaggaaccacttccaacccaagagtttcg 9644384  T
Q  347 ctctatccacca 358  Q
    ||||||||||||    
T  9644383 ctctatccacca 9644372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 21926678 - 21926608
Alignment:
Q  299 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcac 370  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  21926678 aactagcagggcacttagccag-aaccacttccaggctaagagtttcactctatccaccacagactcctcac 21926608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 268 - 358
Target Start/End: Complemental strand, 13297685 - 13297595
Alignment:
Q  268 ggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccacca 358  Q
    ||||||||||||||| ||| | | | |||| |||||||||| |||||||||| |||||| || ||||||||||||||| ||||||||||||    
T  13297685 ggctgcacctcccactcatgataagtgcaggaactagcaggacacttagccatgaaccaatttcaagctaagagtttcactctatccacca 13297595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 52372900 - 52372835
Alignment:
Q  130 cacacccagcaaggaaaa-gcgcaaggagagacccaagaagacaggctggataggtagaggcaaag 194  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  52372900 cacatccagcaaggaaaaagcgcaaggagagacccaagaagacaggccggagaggtagaggcaaag 52372835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 3227649 - 3227729
Alignment:
Q  264 gacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagttt 344  Q
    |||||| ||||| |||||| |||| |  || |||| |||||||||||||||| ||||||| ||||| ||||||||||||||    
T  3227649 gacgggttgcacttcccactcatagagagaacagagactagcagggcacttaaccaggaatcactttcaagctaagagttt 3227729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 15274451 - 15274347
Alignment:
Q  255 ccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatcc 354  Q
    |||||| ||||| | ||||||||||||| |||| |  || ||  |||||||||| |||||||| ||||| ||||| |||||||| |||||| |||| |||    
T  15274451 ccaacacaggacagactgcacctcccactcatagagagaacatgaactagcaggacacttagctaggaatcacttacaagctaaaagtttcactctgtcc 15274352  T
Q  355 accac 359  Q
    |||||    
T  15274351 accac 15274347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 247 - 362
Target Start/End: Complemental strand, 42032845 - 42032730
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  42032845 taccgttgccaacaaaggacgggttgcacctcccactcataaaaggagcaggaagtagcagggcacttagccaggaaccacttccaagctaagagtttcg 42032746  T
Q  347 ctctatccaccacaga 362  Q
    |||||| |||||||||    
T  42032745 ctctattcaccacaga 42032730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 42032992 - 42032899
Alignment:
Q  99 tggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaggctggataggtagaggcaaag 194  Q
    ||||||||| ||||||||||  |||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  42032992 tggcccccgaaaagggccccaccacaaccagcgcacccaacaaggaaaagcgcaaggagaga--caagaagacaggctggaaaggtagaggcaaag 42032899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 370
Target Start/End: Original strand, 34152007 - 34152124
Alignment:
Q  253 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 352  Q
    ||||||||||||| ||| |||||||||||| ||| ||| | |||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  34152007 tgccaacaaaggatgggttgcacctcccactcatgaaaagtgcaggaactgctagggcgcttagccaggaaccacttccaagctaagagtttagctctat 34152106  T
Q  353 ccaccacagacccctcac 370  Q
    |||| |||| | ||||||    
T  34152107 ccacaacaggctcctcac 34152124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 41927126 - 41927018
Alignment:
Q  253 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 352  Q
    |||||||| |||| ||| |||| ||||||| |||| ||  ||||| || | ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  41927126 tgccaacacaggaaggggtgcatctcccactcatagaaaaagcaggaatttgcacggcacttagccaggaaccacttccaagctaagagattcgctctat 41927027  T
Q  353 ccaccacag 361  Q
    |||||||||    
T  41927026 ccaccacag 41927018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 24604939 - 24604837
Alignment:
Q  257 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 356  Q
    |||| |||| |||||||||||||||| ||| | | ||| | ||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  24604939 aacataggatgggctgcacctcccactcatgataagagaaaaaactagcaggccacttagccaagaaccactttcaatctaagagtttcgctctatccac 24604840  T
Q  357 cac 359  Q
    |||    
T  24604839 cac 24604837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 350
Target Start/End: Original strand, 32073929 - 32074017
Alignment:
Q  262 aggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctct 350  Q
    |||||||||||| |||||||| |||||||||||||| |||||| ||| ||||||||||| || ||||||||| ||||||||||| ||||    
T  32073929 aggacgggctgcgcctcccactcataaaaggagcaggaactagtaggacacttagccagaaatcacttccaaactaagagtttcactct 32074017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 2074795 - 2074897
Alignment:
Q  257 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 356  Q
    |||| |||||||| |||||||||||| |||| |  || ||| |||||||||||||||||||| ||||| ||||| || ||||||||||  || |||||||    
T  2074795 aacacaggacgggttgcacctcccactcatagagagaacaggaactagcagggcacttagcctggaacaacttcaaaactaagagtttaactatatccac 2074894  T
Q  357 cac 359  Q
    |||    
T  2074895 cac 2074897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 42241217 - 42241322
Alignment:
Q  253 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 352  Q
    ||||| || |||||||| |||||||||||| ||    | | |||| |||||| || || ||| ||||||||||||||||||||||||||||||||| |||    
T  42241217 tgccagcacaggacgggttgcacctcccactcaaggtaagtgcaggaactagtagagcgcttcgccaggaaccacttccaagctaagagtttcgctttat 42241316  T
Q  353 ccacca 358  Q
    ||||||    
T  42241317 ccacca 42241322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 36650457 - 36650524
Alignment:
Q  292 gagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 359  Q
    |||||| |||||||| | ||||||||| ||||||||| |||||||||||||||  |||| ||||||||    
T  36650457 gagcaggaactagcaagacacttagcccggaaccactcccaagctaagagtttaactctgtccaccac 36650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 38492761 - 38492803
Alignment:
Q  319 aggaaccacttccaagctaagagtttcgctctatccaccacag 361  Q
    ||||||||||| |||||||||||||||||| ||||||||||||    
T  38492761 aggaaccactttcaagctaagagtttcgctttatccaccacag 38492803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 4040348 - 4040408
Alignment:
Q  294 gcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatcc 354  Q
    |||| |||||||||  | ||| ||||||||| |||||||||||||| ||||||||||||||    
T  4040348 gcaggaactagcagaacgcttcgccaggaactacttccaagctaagggtttcgctctatcc 4040408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 7656846 - 7656906
Alignment:
Q  310 cacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcac 370  Q
    |||||||  |||||||||||||||  |||||||||| ||||||||||||||| | ||||||    
T  7656846 cacttagttaggaaccacttccaaattaagagtttcactctatccaccacaggctcctcac 7656906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 43411617 - 43411510
Alignment:
Q  256 caacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatcca 355  Q
    ||||||||||||||||||||||||||| ||| | | | |||| | |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  43411617 caacaaaggacgggctgcacctcccactcatgataagtgcaggagctagcaggacacttagccaggaaacactttcaagctaagagtttcgctctatcca 43411518  T
Q  356 ccacagac 363  Q
    ||| ||||    
T  43411517 ccaaagac 43411510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 10994527 - 10994432
Alignment:
Q  264 gacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 359  Q
    ||||||||||||||||||| |||| |  || | | ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  10994527 gacgggctgcacctcccactcatagagagaacgggaactagcagggcacttagccaggaaccacttccaagctaagagtttaactctatccaccac 10994432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 41074545 - 41074658
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||| ||||| || || ||||||||||||| |||| ||| ||| | | || | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  41074545 taccgatgccagcacagaacgggctgcaccttccactcatgaaaagtgaagga-ctagcagggcacttagccaggaaccactttcaagctaagagtttcg 41074643  T
Q  347 ctctatccaccacag 361  Q
    || | ||||||||||    
T  41074644 ctttgtccaccacag 41074658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 29682758 - 29682701
Alignment:
Q  302 tagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 359  Q
    ||||||||  ||||||| ||||||||||| |||||||||||||  |||||||||||||    
T  29682758 tagcagggtgcttagcctggaaccacttctaagctaagagtttaactctatccaccac 29682701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 370
Target Start/End: Original strand, 30251386 - 30251503
Alignment:
Q  253 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 352  Q
    ||||| |||||||| |||| |||||||||| ||| ||  |||||  ||||  ||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  30251386 tgccagcaaaggaccggctacacctcccactcatgaacagagcaagaacttccagggcacttagccaggaaccactttcaagccaagagtttcactctat 30251485  T
Q  353 ccaccacagacccctcac 370  Q
    ||||||||||| ||||||    
T  30251486 ccaccacagactcctcac 30251503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 361
Target Start/End: Original strand, 45068115 - 45068221
Alignment:
Q  255 ccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatcc 354  Q
    ||||||||||||||| |||||||||| | ||| | | | | || ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45068115 ccaacaaaggacgggttgcacctccccctcatgataagtgtaggaactgccagggcacttagccaggaaccacttccaagctaagagtttagctctatcc 45068214  T
Q  355 accacag 361  Q
    || ||||    
T  45068215 actacag 45068221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 50655057 - 50655154
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagttt 344  Q
    ||||| |||||||||||||| || |||||||||||| |||  ||  ||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  50655057 taccgctgccaacaaaggacaggttgcacctcccactcatggaaaaagcaagaactagcaggacacttagccaggaaccacttccaagctaagagttt 50655154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 19469759 - 19469647
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||| |||||||||||||| |||| |||||||||| ||| | | | |||| |||||||||  |||||| | ||||||||||||||||||||||  || |    
T  19469759 taccgatgccaacaaaggacaggctacacctcccactcatgataagtgcaggaactagcaga-cacttaactaggaaccacttccaagctaagaactttg 19469661  T
Q  347 ctctatccaccaca 360  Q
    ||||||||||||||    
T  19469660 ctctatccaccaca 19469647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 359
Target Start/End: Original strand, 23012323 - 23012435
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||| || ||||| |||||| |||||||||||||  ||| | | | |||||||||||||   |||||||||| |||||| |||||| |||||||||||     
T  23012323 taccgatgtcaacacaggacgtgctgcacctcccattcatgataagtgcagaaactagcacaacacttagccatgaaccaattccaaactaagagtttca 23012422  T
Q  347 ctctatccaccac 359  Q
    |||||||||||||    
T  23012423 ctctatccaccac 23012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 24065097 - 24065196
Alignment:
Q  262 aggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacag 361  Q
    |||||||| || ||||||||  ||||| |  | ||| ||||||||||| ||||||||| |||||||||||| | |||||||||| |||||||||||||||    
T  24065097 aggacgggttgtacctcccattcataataacaacaggaactagcagggtacttagccatgaaccacttccaggttaagagtttcactctatccaccacag 24065196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 4866838 - 4866794
Alignment:
Q  300 actagcagggcacttagccaggaaccacttccaagctaagagttt 344  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  4866838 actagcaaggcacttagccaggaaccacttccaagctaagagttt 4866794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 48309657 - 48309717
Alignment:
Q  299 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 359  Q
    ||||||||||  |||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  48309657 aactagcaggaaacttagcccggaacgacttccaagctaagagtttcactctatccaccac 48309717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 12842920 - 12843024
Alignment:
Q  254 gccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatc 353  Q
    ||||||| ||||||| |||||||||  ||   ||| ||||||||  ||||||| |  |||||| ||||||||||||||||  ||||||||| ||||| ||    
T  12842920 gccaacacaggacggactgcacctctaactggtaataggagcagggactagcatgatacttagtcaggaaccacttccaaagtaagagtttagctctctc 12843019  T
Q  354 cacca 358  Q
    |||||    
T  12843020 cacca 12843024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 26982031 - 26982136
Alignment:
Q  265 acgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacc 364  Q
    |||||||| ||||||||| ||| | ||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| |     
T  26982031 acgggctgaacctcccactcatgataggtgcaggaacttgcagggcacttagccaagaaccacttccaagctaagagttttactctatccaccacaggct 26982130  T
Q  365 cctcac 370  Q
    ||||||    
T  26982131 cctcac 26982136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 361
Target Start/End: Complemental strand, 4778134 - 4778030
Alignment:
Q  257 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 356  Q
    |||| ||||||||||||||||||||| |||| |  ||||||  ||||||||||||| ||||| |||||||||||||| ||||||||||  ||||||||||    
T  4778134 aacacaggacgggctgcacctcccactcatagagagagcagggactagcagggcacctagcctggaaccacttccaaactaagagtttaactctatccac 4778035  T
Q  357 cacag 361  Q
    |||||    
T  4778034 cacag 4778030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 2833286 - 2833394
Alignment:
Q  255 ccaacaaaggacgggctgcacctcccacccataaaaggagcagaaa----ctagcagggcacttagccaggaaccacttccaagctaagagtttcgctct 350  Q
    |||||| ||||||||||||||||||||| |||| |  |||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  2833286 ccaacataggacgggctgcacctcccactcatagagagagcaggaactagctagcagggcacttagccatgaaccacttccaagctaagagtttcactct 2833385  T
Q  351 atccaccac 359  Q
    ||| |||||    
T  2833386 atctaccac 2833394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 34213254 - 34213146
Alignment:
Q  253 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 352  Q
    |||||||| ||||||||||||||||| ||| | | | | | |||  |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||    
T  34213254 tgccaacacaggacgggctgcacctcacactcgtgataagtgcatgaactagcatggcacttagccatgaaccacttccaagctaagagtttcactctat 34213155  T
Q  353 ccaccacag 361  Q
    |||| ||||    
T  34213154 ccacaacag 34213146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 41640926 - 41640824
Alignment:
Q  257 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 356  Q
    |||| ||||||||||||||||||||| ||||    |||||| |||||||||||||||||||| | ||||||||||||| |||||||||  |||| |||||    
T  41640926 aacacaggacgggctgcacctcccactcatagggagagcaggaactagcagggcacttagcccgaaaccacttccaagttaagagtttaactctgtccac 41640827  T
Q  357 cac 359  Q
    |||    
T  41640826 cac 41640824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 1045406 - 1045466
Alignment:
Q  299 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 359  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  | |||||||||||    
T  1045406 aactagcagggcacttagccaggaaccacttccaagctgagagtttaaccctatccaccac 1045466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 1762039 - 1762080
Alignment:
Q  312 cttagccaggaaccacttccaagctaagagtttcgctctatc 353  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  1762039 cttagccatgaaccacttccaagctaagagtttcgctctatc 1762080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 41650583 - 41650524
Alignment:
Q  301 ctagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccaca 360  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41650583 ctagcagagcacttagccaggaaccacttccaagctaagagtttcgctctatccaccaca 41650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 33862027 - 33861926
Alignment:
Q  253 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 352  Q
    ||||| ||||||||||||| |||||||||| ||| ||| |||||| ||||| |||||||||||||| ||| |||||||||||| || |||||| ||||||    
T  33862027 tgccagcaaaggacgggctacacctcccactcatgaaaagagcaggaactaccagggcacttagccgggagccacttccaagccaa-agtttcactctat 33861929  T
Q  353 cca 355  Q
    |||    
T  33861928 cca 33861926  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 260 - 376
Target Start/End: Original strand, 27639444 - 27639560
Alignment:
Q  260 aaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 359  Q
    |||||||||| ||||||||| || ||| | | | |||  |||||||||| || ||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  27639444 aaaggacgggttgcacctcctactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaattttgctctatccaccac 27639543  T
Q  360 agacccctcactatggg 376  Q
    || |  |||||||||||    
T  27639544 agtctgctcactatggg 27639560  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 3465354 - 3465406
Alignment:
Q  316 gccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctc 368  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  3465354 gccaagaaacacttccaagctaagagtttcgctctatccaccaaagactcctc 3465406  T

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Target: scaffold0329 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 18408 - 18521
Alignment:
Q  247 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 346  Q
    ||||| |||||||| || ||||| |||||||||||| ||| | | | |||| ||||||||||||||||||||  ||| ||||| ||| ||| ||||||||    
T  18408 taccgctgccaacacagaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagcccagaatcactttcaaactatgagtttcg 18507  T
Q  347 ctctatccaccaca 360  Q
    ||||||||||||||    
T  18508 ctctatccaccaca 18521  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 52082 - 51995
Alignment:
Q  271 tgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccacca 358  Q
    |||||||||||| |||| || | |||  |||||||| | ||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  52082 tgcacctcccactcatataaagtgcaagaactagcaagacacttagccaggaaccacttccaagctaagagtttagctcgatccacca 51995  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 364
Target Start/End: Original strand, 9557358 - 9557468
Alignment:
Q  254 gccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatc 353  Q
    |||| |||||||||||||||||||||||| ||| | | | |||| | |||||||| ||||||| |||||| |||||||||||||||| ||| || | |||    
T  9557358 gccagcaaaggacgggctgcacctcccactcatgataagtgcaggagctagcaggacacttagtcaggaatcacttccaagctaagaattttgccccatc 9557457  T
Q  354 caccacagacc 364  Q
    |||||| ||||    
T  9557458 caccaccgacc 9557468  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 9755699 - 9755759
Alignment:
Q  299 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 359  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||| || | ||||||||    
T  9755699 aactagcagggcacttagcccgaaaccacttccaaactaagagtttcactttgtccaccac 9755759  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 12833951 - 12834015
Alignment:
Q  306 agggcacttagccaggaaccacttccaagctaagagt-ttcgctctatccaccacagacccctca 369  Q
    |||| |||||| ||||||||||| |||||||||||||    |||||||||||||||| |||||||    
T  12833951 agggtacttagtcaggaaccactcccaagctaagagtagaggctctatccaccacaggcccctca 12834015  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 83252 - 83311
Alignment:
Q  299 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccacca 358  Q
    |||||||||| ||||| | || ||||||||||||||||||||||||  || |||||||||    
T  83252 aactagcaggacacttcggcatgaaccacttccaagctaagagtttgactttatccacca 83311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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