View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15057_high_1 (Length: 802)
Name: NF15057_high_1
Description: NF15057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15057_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 694; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 17 - 787
Target Start/End: Original strand, 32714424 - 32715193
Alignment:
| Q |
17 |
aggtttatagcaccatgtgtgatggcaagcatactcatttgggtgaagattgttgttttgaactgctctagccgttttgcaacctaacaaacaaatgaca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32714424 |
aggtttatagcaccatgtgtgatggcaagcatactcatttgagtgaagattgttgttttgaactgctctagctgttttgcaacctaacaaacaaatgaca |
32714523 |
T |
|
| Q |
117 |
agcaacaaaggtcaatgtaaacacatggcttaattatgaacagtgaagttcttttttcccctcgtctttttctacattgtttgtgacattgttagataag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32714524 |
agcaacaaaggtcaatgtaaacacatggcttaattatgaacagtgaagttcttttttcccctcgtctttttctacattgtttgtgacattgttagataag |
32714623 |
T |
|
| Q |
217 |
ataaccagatactaatgtacataacagaactaaacccataaagcacatatactaacacattgagatcggtaataatatggagaaataaataattgaatgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32714624 |
ataaccagatactaatgtacataacagaactaaacccataaatcacagatactaacacattgagatcggtaataatatggaaaaataaataattgaatgt |
32714723 |
T |
|
| Q |
317 |
agctacatttgtctgtgttatgtaaatgtttgacaccgacacgtgatgaagttcagacgcgccttcaatgtgaagtgacggtgctacacagaaccaaact |
416 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32714724 |
agctacatttgtctgtgttatgtaaatgtttaacaccgacacgtgatgaagttcagacgcgccttcaatgtgaagtgacggtgctacacagaaccaaact |
32714823 |
T |
|
| Q |
417 |
cttccttgcaaaccctccannnnnnnnacttaattttctgatggttctacaaggtaaaagctagcaaattgtaccaaatatacctcttagtgagaaaccc |
516 |
Q |
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| T |
32714824 |
cttccttgcaaatcctcca-cccccccacttaactttctgatggttctacaaggtaaaagctagcaaattgtaccaaatatacctctcagtgagaaaccc |
32714922 |
T |
|
| Q |
517 |
agaaattcaagatgaaatatgtaacattaatcaaactaaaagataagaaaaacaattactacgtgttctggactggcccaagtctctcatcaactcaagg |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32714923 |
agaaattcaagatgaaatatgtaacattaatcaaactaaaagataagaaaaacaattactacgtgttctggactggcccaagtttctcatcaactcaagg |
32715022 |
T |
|
| Q |
617 |
cccactacacaaaggcccaattcagcggaattcttcctcagcctcagatcctctccaattcgtaacggctccaacggctagtaatgcttctcaacggccg |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32715023 |
cccactacacaaaggcccaattcagcggaattcttcctcagcctcagatcctctccaattcgtaacggctccaacggctagtaatgcttctcaacggccg |
32715122 |
T |
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| Q |
717 |
ccggatccaaacattgatgaggcgtcattggtaacaacggtactccatcactctccaacggcccctctctg |
787 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32715123 |
ccggatccaaacattgatgaggcgtcaatggtaacaacggtactccatcactctccaacggctcctctctg |
32715193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 32719686 - 32719832
Alignment:
| Q |
17 |
aggtttatagcaccatgtgtgatggcaagcatactcatttgggtgaagattgttgttttgaactgctctagccgttttgcaacctaacaaacaaatgaca |
116 |
Q |
| |
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|||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
32719686 |
aggtttatggctccatatgtgatggcaagcatactcatttgggtgaagattgttgttttgaactgctctaactgttttgcaacctaacaaacaaatgaca |
32719785 |
T |
|
| Q |
117 |
agcaacaaaggtcaatgtaaacacatggcttaattatgaacagtgaa |
163 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
32719786 |
agcaacaaagatcaatgtaaacacatggcttaattatgaacattgaa |
32719832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 32710794 - 32710883
Alignment:
| Q |
23 |
atagcaccatgtgtgatggcaagcatactcatttgggtgaagattgttgttttgaactgctctagccgttttgcaacctaacaaacaaat |
112 |
Q |
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||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||| |||| |
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| T |
32710794 |
atagctccatgtttgatggcaagcatactcatttgggtgaaaattgttgttttgaacttctctaaccgctttgcaacctaacaaaaaaat |
32710883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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