View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15057_high_2 (Length: 729)

Name: NF15057_high_2
Description: NF15057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15057_high_2
NF15057_high_2
[»] chr4 (2 HSPs)
chr4 (9-710)||(31100387-31101091)
chr4 (633-710)||(31101119-31101196)


Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 9 - 710
Target Start/End: Original strand, 31100387 - 31101091
Alignment:
Q  9 gacatcatcaacaccacaagaaattccattgt--aagtaggtgagtgctttgcattccttggtacatcattctctatcaaagatttagggcacttgtact 106  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31100387 gacatcatcaacaccacaagaaattccattgtcaaagtaggtgagtgctttgcattccttggtacatcattctctatcaacgatttagggcacttgtact 31100486  T
Q  107 actttcttggtgaagaggtcatccctacagctagca-caggtttatttcttagccaacataaatatattgaagaccttcttgaaggaactgaaatgttag 205  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100487 actttcttggtgaagaggtcatccctacagctagcaacatgtttatttcttagccaacataaatatattgaagaccttcttgaaggaactgaaatgttag 31100586  T
Q  206 aagccaagcttgttcttattccattgtacaaagatggcgacttacaaagttctgatgccaccttctatcgcaaaatcattggcagtctacaatatttaac 305  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100587 aagccaagcttgttcttattccattgtacaaagatgacgacttacaaagttctgatgccaccttctatcgcaaaatcattggcagtctacaatatttaac 31100686  T
Q  306 tatgactcggcctgatactctcggtcaacaaattggtataattcgttcaaagatcaaccactacccatttaaatgcattgaagaggcttctacgctacat 405  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31100687 tatgactcggcctgatattctcggtcaacaaattggtataattcgtgcaaagatcaaccactacccatttaaatgcattgaagaggcttctacactacat 31100786  T
Q  406 tgaaggaactatctttaacagttttcttcttcgaaaaccaacatcttctaccctcattgcctatagtgatgttgactggactggaaacaaaaatgactac 505  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100787 tgaaggaactatctttcacggttttcttcttcaaaaaccaacatcttctaccctcattgcctatagtgatgttgactggactggaaacaaaaatgactac 31100886  T
Q  506 acctctacttctgctcaccaagttgtttattatggttcaagtttaatctcatgaaaatcctaaaagcaatgggttatggcaagatctcccacaaaagcta 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100887 acctctacttctgctcaccaagttgtttattatggttcaagtttaatctcatgaaaatcctaaaagcaatgggttatggcaagatctcccacaaaagcta 31100986  T
Q  606 aatatagaactcttccaaactccgcaacagaattatccgggaaacattctctattagtagaattaggtgtcaccacttcaaagactccatcactgtctca 705  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  31100987 aatatagaactcttccaaactccgcaacagaattatcctggaaacattctctaatagtagaattaggtgtcgccacttcaaagactccatcactgtctca 31101086  T
Q  706 ctgat 710  Q
    |||||    
T  31101087 ctgat 31101091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 633 - 710
Target Start/End: Original strand, 31101119 - 31101196
Alignment:
Q  633 cagaattatccgggaaacattctctattagtagaattaggtgtcaccacttcaaagactccatcactgtctcactgat 710  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31101119 cagaattatcctggaaacattctctaatagtagaattaggtgtcgccacttcaaagactccatcactgtctcactgat 31101196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University