View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15057_high_3 (Length: 616)
Name: NF15057_high_3
Description: NF15057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15057_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 6 - 602
Target Start/End: Complemental strand, 48477804 - 48477210
Alignment:
| Q |
6 |
aggagcagagataactattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagta |
105 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48477804 |
aggaacagtgataactattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagta |
48477705 |
T |
|
| Q |
106 |
tttgattatctcacaataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaa |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48477704 |
tttgattatctcacaataaaacttgcaacaagttacttctcaacagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaa |
48477605 |
T |
|
| Q |
206 |
acttgtgtttgtgaaatatttcatgcaaataaaaactgtgatatgaaaattgaagattagcaaaattgacaattactgtggtaacttttattttagagga |
305 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48477604 |
actcctgtttgtgaaatatttcatgcaaataaaaactgtgatatgaaaattgaagattagcaaaattgacaattaccgtggtaacttttattttagagga |
48477505 |
T |
|
| Q |
306 |
attactgtggtaactggtaaggatagtaatttcgtattcttttatgagaatctctatgcattaaataacttgttgagatattttaatctcgatgcatgaa |
405 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48477504 |
attactgtggtaactggtaaggatagtaatttcgtattcttttatgagaatttctatgcattaaataacttgttgagatattttaatctcgatgcatgaa |
48477405 |
T |
|
| Q |
406 |
tcagacctccatcttatgcagatgaaaacaatgttaatgggccataaacatcaattatgcaagttcttatgttacatccgagccataagttgagagtata |
505 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48477404 |
tcagacctccatcttatgcagatgaaaacaatattaatgggccataaacatcaagtatgcaagttcttatgttacatccgagccataagttgagagtata |
48477305 |
T |
|
| Q |
506 |
gtagagtaattctcatatgacaatgttatgannnnnnnnnnnngtcaggggaaattattcaatagagtagaaatagctgtcaaacgactctcaaaaa |
602 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48477304 |
gtagagtaattctcagatgacaatgttatga--ttttgtttttgtcaggggaaattattcaatggagtagaaatagctgtcaaacgactctcaaaaa |
48477210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 398
Target Start/End: Complemental strand, 48469480 - 48469087
Alignment:
| Q |
6 |
aggagcagagataactattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagta |
105 |
Q |
| |
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|||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48469480 |
aggaacagtgattactattacaagaatgatgtacagattgaggatacatttatcagcacctgacgaaggtctcaatgaaaatggttctgatttgatagta |
48469381 |
T |
|
| Q |
106 |
tttgattatctcacaataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48469380 |
tttgattatctcacaataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtatcatttggaa |
48469281 |
T |
|
| Q |
206 |
acttgtgtttgtgaaatatttcatgcaaataaaaactgtgatatgaaaattgaagattagcaaaattgacaattactgtggtaacttttattttagagga |
305 |
Q |
| |
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| | ||||| ||||| ||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
48469280 |
attcatgtttctgaaaaatttcatgcaaatgaaaacggtgaaatgtaaattgaagattagcaaaattgacaattgctgtggtaactttttttttagagga |
48469181 |
T |
|
| Q |
306 |
attactgtggtaactggtaaggatagtaatttcgtattcttttatgagaatctctatgcattaaataacttgttgagata-ttttaatctcgat |
398 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||||||||||| |||| || ||||||| ||||| ||||| |||| ||||||||||||| |
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| T |
48469180 |
attattgtggtaactggtaaggatagtaattatgtattcttttatgtgaatttcaatgcattgaataaattgttttgatatttttaatctcgat |
48469087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 48884368 - 48884551
Alignment:
| Q |
15 |
gataactattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagtatttgattat |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
48884368 |
gataactattacaagaatgatgtacagattgaggatacatttatcagcacctgaagaagatct----ggaaatggttctgatttgatagtatttgattat |
48884463 |
T |
|
| Q |
115 |
ctcacaataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttg |
202 |
Q |
| |
|
|||||||||||| | |||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48884464 |
ctcacaataaaagtagcaagaggttacttctcaaaagaaaataaggccggagagggtggatttggtgcagtgtacaaggtaacatttg |
48884551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 48485533 - 48485264
Alignment:
| Q |
23 |
ttacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagtatttgattatctcacaat |
122 |
Q |
| |
|
||||||||||| | |||| | |||||||| ||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
48485533 |
ttacaagaatgatatacaaaatgaggatatatttatcagcagctgaagaagatctcaatggaaatggttctgatttaatagtatttaattatctcacaat |
48485434 |
T |
|
| Q |
123 |
aaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaa--acttgtgtttgtgaa |
220 |
Q |
| |
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||| | |||||| | |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || || || | |||| ||||| |
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| T |
48485433 |
taaagtggcaacagataacttctcaaaagaaaataagcttggagagggtggatttggtgtagtgtacaaggtaacatatgaaaatacatctgttggtgaa |
48485334 |
T |
|
| Q |
221 |
atatttcatgcaaataaaaactgtgatatgaaaattgaagattagcaaaattgacaattactgtggtaact |
291 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||| |||||||||||||| ||| || |||||||||||| ||||| |
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|
| T |
48485333 |
atatttcatg-aaatagaaactgtgaaatgtaaattgaagattagaaaagttcacaattactgtgataact |
48485264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 382 - 536
Target Start/End: Original strand, 48884629 - 48884780
Alignment:
| Q |
382 |
gatattttaatctcgatgcatgaatcagacctccatcttatgcagatgaaaacaatgttaatgggccataaacatcaattatgcaagttcttatgttaca |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| |||||||||| |
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|
| T |
48884629 |
gatattttaatctcgatgcatgaatcagacctacatcttatgcagatgaaaacaatgttagtggaccatagatatcaattatgcaagttattatgttaca |
48884728 |
T |
|
| Q |
482 |
tccgagccataagttgagagtatagtagagtaattctcatatgacaatgttatga |
536 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
48884729 |
tccgagccataagttgag---atagtagagtaattctctgatgacaatgttatga |
48884780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 439 - 602
Target Start/End: Complemental strand, 48468508 - 48468348
Alignment:
| Q |
439 |
ttaatgggccataaacatcaattatgcaagttcttatgttacatccgagccataagttgagagtatagtagagtaattctcatatgacaatgttatgann |
538 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
48468508 |
ttaatggaccataaatatcaagtatgcaagttattatgttacatccgttccacaagttgagagtatagtagagtaattctctgatgacaatgttatga-- |
48468411 |
T |
|
| Q |
539 |
nnnnnnnnnngtcaggggaaattattcaatagagtagaaatagctgtcaaacgactctcaaaaa |
602 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| |||||| |||||||||||| |
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|
| T |
48468410 |
-cctttttttgtcaggggaaattaggtaatggagtagaaatagccgtcaaaagactctcaaaaa |
48468348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 48469068 - 48469032
Alignment:
| Q |
396 |
gatgcatgaatcagacctccatcttatgcagatgaaa |
432 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48469068 |
gatgcatgaatcagacctacatcttatgcagatgaaa |
48469032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 48884571 - 48884603
Alignment:
| Q |
366 |
ttaaataacttgttgagatattttaatctcgat |
398 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
48884571 |
ttaaataaattgttgagatattttaatctcgat |
48884603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 38817802 - 38818197
Alignment:
| Q |
6 |
aggagcagagataactattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagta |
105 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38817802 |
aggaacagtgattactattacaagaatgatgtacagattggggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagta |
38817901 |
T |
|
| Q |
106 |
tttgattatctcacaataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38817902 |
tttgattatctcacaataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaa |
38818001 |
T |
|
| Q |
206 |
a--cttgtgtttgtgaaatatttcatgc-aaataaaaactgtgatatgaaaattgaagattagcaaaattgacaattactgtggtaacttttatttt--a |
300 |
Q |
| |
|
| | |||||| ||||||||||||||| ||||| ||||||||| ||| ||||| ||||||| |||| |||| |||||| ||||||||||| |||| | |
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|
| T |
38818002 |
attcacgtgtttctgaaatatttcatgctaaatagaaactgtgaaatgtaaattcaagattaacaaagttgagaattacactggtaacttttttttttaa |
38818101 |
T |
|
| Q |
301 |
gaggaattactgtggtaactggtaaggatagtaatttcgtattcttttatgagaatctctatgcattaaataacttgttgagatattttaatctcg |
396 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || ||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
38818102 |
aaggaattactgtggtaactggcaaggatagttatgatgtattcttttatgtcaatttctatgcattaaataaattgctgagatattttaatctcg |
38818197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 602
Target Start/End: Original strand, 38819595 - 38819644
Alignment:
| Q |
553 |
ggggaaattattcaatagagtagaaatagctgtcaaacgactctcaaaaa |
602 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
38819595 |
ggggaaattacgtaatggagtagaaatagctgttaaacgactctcaaaaa |
38819644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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