View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15057_high_7 (Length: 304)
Name: NF15057_high_7
Description: NF15057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15057_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 2263534 - 2263805
Alignment:
| Q |
18 |
ttacttagcatgcacatgcactaaatatgcttttgaaaaactcaagtattgtctattgaagtaaataggattttcaaaaagcttaagttat-gtcttaaa |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
2263534 |
ttacttagcatgcacatgcactaaatatacttttgaaaaactcaagtattgtctattgaagtaaataagattttcaaaaagcttaagttattgtcttaaa |
2263633 |
T |
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| Q |
117 |
taggct-ggtgatacgcctttgtcggatgatttaacctgtttctatctctaataatgatgttgaattaatatgaactgtcacatcttcatttaacgtgtc |
215 |
Q |
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|||||| ||||||| | |||||||||| || |||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
2263634 |
taggctaggtgataggtctttgtcggacgacttaatctgtttctatctctaatagtgatgttgaatcaatataaactgtcacatcttcatttaacgtgtc |
2263733 |
T |
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| Q |
216 |
atgtcatagtatttaacaattgaacttaatatactgttcaacgaacgaaattgctaattcgtaaaacatata |
287 |
Q |
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||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
2263734 |
atgtcatagtatttaacgattgaacttaatgtaatgttcaacgaacgaaattgctaattcgtaaaacatata |
2263805 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 21324828 - 21324873
Alignment:
| Q |
171 |
tgatgttgaattaatatgaactgtcacatcttcatttaacgtgtca |
216 |
Q |
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|||||| ||||| | ||||||| ||||||||||||||||||||||| |
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| T |
21324828 |
tgatgtggaattcacatgaactatcacatcttcatttaacgtgtca |
21324873 |
T |
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