View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15057_high_8 (Length: 239)
Name: NF15057_high_8
Description: NF15057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15057_high_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 27770813 - 27770586
Alignment:
| Q |
15 |
atagttgatagttgggcggtttagatattaagtttggtaatttagattttacaa-gaaagtttaaatttgcatttttataaagtgtcctatcaaatttaa |
113 |
Q |
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| T |
27770813 |
atagttgatagttgggcggtttagataataagtttggtaatttagattttaaaaagaaaattaaaatttgcatttttgaaaagtgtcctatcaaatttaa |
27770714 |
T |
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| Q |
114 |
ctcccaccattcaccaatgcattca----gtgcgtgaatgcagatacatatcttaactgtaagaattcatttttgaattaagaacttcacatttattaat |
209 |
Q |
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||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27770713 |
ctctcaccattcaccaatgc-ttcagtgcgtgcgtgaatgcagatacatatcttaactgtaagaattcatttttgaattaaaaacttcacatttattaat |
27770615 |
T |
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| Q |
210 |
tggacataacaatattcgacatcctatctc |
239 |
Q |
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||||||| |||||||||||||||||||||| |
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| T |
27770614 |
tggacat-acaatattcgacatcctatctc |
27770586 |
T |
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