View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15057_high_9 (Length: 230)
Name: NF15057_high_9
Description: NF15057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15057_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 15952486 - 15952688
Alignment:
| Q |
16 |
cagagaagtagcaaagatctgcaaacatggcttcatggtcagttggacacagaagacaacccc----caagagaataccatgctttagttgaattccttg |
111 |
Q |
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| T |
15952486 |
cagagaagtagcaaagatctgcaaacatggcttcatggtcagttggacacagaagacaaccccggcccaagagaataccatgctttagttgaattccttg |
15952585 |
T |
|
| Q |
112 |
caaagaaataatagatgtgaataggattaaaagccctaaaaacgctgctgtcatatttgacaagattgtatacaccattacccgcaagagaacagaaccc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15952586 |
caaagaaataatagatgtgaataggattaaaagccctaaaaacgctgctgtcatatttgacaagatagtatacaccattacccgcaagagaacagaaccc |
15952685 |
T |
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| Q |
212 |
aat |
214 |
Q |
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||| |
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| T |
15952686 |
aat |
15952688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 29924950 - 29924795
Alignment:
| Q |
55 |
cagttggacacagaagacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaac |
154 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29924950 |
cagttgcacacagaagacagcccccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaac |
29924851 |
T |
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| Q |
155 |
gctgctgtcatatttgacaagattgtatacaccattacccgcaagagaacagaacc |
210 |
Q |
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| T |
29924850 |
gctgctgtcatatttgacaagattgtatacaccattgcccgcaagagaacagaacc |
29924795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 29926703 - 29926669
Alignment:
| Q |
16 |
cagagaagtagcaaagatctgcaaacatggcttca |
50 |
Q |
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| T |
29926703 |
cagagaagtagcaaagatctgcaaacatggcttca |
29926669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 10032629 - 10032805
Alignment:
| Q |
28 |
aaagatctgcaaacatggcttcatggtcagttggacacagaagacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagat |
127 |
Q |
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||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10032629 |
aaagatctgcaaacatggcttcagagctagttggac------gacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagat |
10032722 |
T |
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| Q |
128 |
gtgaataggattaaaagccctaaaaacgctgctgtcatatttgacaagattgtatacaccattacccgcaagagaacagaacc |
210 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10032723 |
gtgaataggattaaaagccctaaaaacgttgttgtcatatttgacaagattgtatacaccattgcccgcaagagaacagaacc |
10032805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 1636945 - 1636792
Alignment:
| Q |
57 |
gttggacacagaagacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaacgc |
156 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||| || ||||| || || | |
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| T |
1636945 |
gttgcacacagaagacaacccccgagagaataccatgctttagttgagttcctcttgaagaaatagtagatatgaatgggattgaatgccctcaagacac |
1636846 |
T |
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| Q |
157 |
tgctgtcatatttgacaagattgtatacaccattacccgcaagagaacagaacc |
210 |
Q |
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| T |
1636845 |
ttctgtcatatttgagaagattgtatatcccgataccggcaagagaacaaaacc |
1636792 |
T |
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