View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15057_low_10 (Length: 254)
Name: NF15057_low_10
Description: NF15057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15057_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 12086681 - 12086448
Alignment:
| Q |
16 |
gtatccagattccccgagaacatccaaaagcctcatgtatttgtaagtatatttcttcacaagaaagtgactatttaatccatagttccaggataaatgt |
115 |
Q |
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| T |
12086681 |
gtatccagattccccgagaacatccaaaagccccatgtatttgtaagtatatttcttcacaagaaagtgactatttaatccatagttccaggataaatgt |
12086582 |
T |
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| Q |
116 |
gtgcatgt-----agacatgtataatacaaattcagatgcagaaacttataccaaaatcaaccaattatatgtttaagttaataaattcaattattaatg |
210 |
Q |
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| T |
12086581 |
gtgcatgtgcagtagacatgtataatacaaattcagatgcagaaacttataccaaaatcaaccaattatatgtttaagttaataaattcaattattaatg |
12086482 |
T |
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| Q |
211 |
aacaacatatcatagtattctctttcagcctatg |
244 |
Q |
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| T |
12086481 |
aacaacatatcatagtattctctttcagcttatg |
12086448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 25301873 - 25301944
Alignment:
| Q |
53 |
tatttgtaagtatatttcttcacaagaaagtgact-atttaatccatagttccaggataaatgtgtgcatgt |
123 |
Q |
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| T |
25301873 |
tatttgcaagtatatttctccacatgaaaatgacttatttaatccatactttcaggataaatgtgtgcatgt |
25301944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 25302054 - 25302098
Alignment:
| Q |
196 |
attcaattattaatgaacaacatatcatagtattctctttcagcc |
240 |
Q |
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| T |
25302054 |
attcaattattaatgaacaacatatcacattattctctgtcagcc |
25302098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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