View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15057_low_2 (Length: 729)

Name: NF15057_low_2
Description: NF15057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15057_low_2
NF15057_low_2
[»] chr4 (2 HSPs)
chr4 (9-710)||(31100387-31101091)
chr4 (633-710)||(31101119-31101196)


Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 9 - 710
Target Start/End: Original strand, 31100387 - 31101091
Alignment:
Q  9 gacatcatcaacaccacaagaaattccattgt--aagtaggtgagtgctttgcattccttggtacatcattctctatcaaagatttagggcacttgtact 106  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31100387 gacatcatcaacaccacaagaaattccattgtcaaagtaggtgagtgctttgcattccttggtacatcattctctatcaacgatttagggcacttgtact 31100486  T
Q  107 actttcttggtgaagaggtcatccctacagctagca-caggtttatttcttagccaacataaatatattgaagaccttcttgaaggaactgaaatgttag 205  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100487 actttcttggtgaagaggtcatccctacagctagcaacatgtttatttcttagccaacataaatatattgaagaccttcttgaaggaactgaaatgttag 31100586  T
Q  206 aagccaagcttgttcttattccattgtacaaagatggcgacttacaaagttctgatgccaccttctatcgcaaaatcattggcagtctacaatatttaac 305  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100587 aagccaagcttgttcttattccattgtacaaagatgacgacttacaaagttctgatgccaccttctatcgcaaaatcattggcagtctacaatatttaac 31100686  T
Q  306 tatgactcggcctgatactctcggtcaacaaattggtataattcgttcaaagatcaaccactacccatttaaatgcattgaagaggcttctacgctacat 405  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31100687 tatgactcggcctgatattctcggtcaacaaattggtataattcgtgcaaagatcaaccactacccatttaaatgcattgaagaggcttctacactacat 31100786  T
Q  406 tgaaggaactatctttaacagttttcttcttcgaaaaccaacatcttctaccctcattgcctatagtgatgttgactggactggaaacaaaaatgactac 505  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100787 tgaaggaactatctttcacggttttcttcttcaaaaaccaacatcttctaccctcattgcctatagtgatgttgactggactggaaacaaaaatgactac 31100886  T
Q  506 acctctacttctgctcaccaagttgtttattatggttcaagtttaatctcatgaaaatcctaaaagcaatgggttatggcaagatctcccacaaaagcta 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100887 acctctacttctgctcaccaagttgtttattatggttcaagtttaatctcatgaaaatcctaaaagcaatgggttatggcaagatctcccacaaaagcta 31100986  T
Q  606 aatatagaactcttccaaactccgcaacagaattatccgggaaacattctctattagtagaattaggtgtcaccacttcaaagactccatcactgtctca 705  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  31100987 aatatagaactcttccaaactccgcaacagaattatcctggaaacattctctaatagtagaattaggtgtcgccacttcaaagactccatcactgtctca 31101086  T
Q  706 ctgat 710  Q
    |||||    
T  31101087 ctgat 31101091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 633 - 710
Target Start/End: Original strand, 31101119 - 31101196
Alignment:
Q  633 cagaattatccgggaaacattctctattagtagaattaggtgtcaccacttcaaagactccatcactgtctcactgat 710  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31101119 cagaattatcctggaaacattctctaatagtagaattaggtgtcgccacttcaaagactccatcactgtctcactgat 31101196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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