View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15058_high_2 (Length: 216)
Name: NF15058_high_2
Description: NF15058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15058_high_2 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 31797454 - 31797247
Alignment:
| Q |
9 |
acatcatcagaatactgcattattgctcatacagggccaaaactaggtagataatcatcaagagtaatgactactaactcgtaaaattctagaggattct |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31797454 |
acatcatcagaatactgcattattgctcatacaaggccaaaactaggtagataatcatcaagagtaatgactactaactcgtaaaagtctagaggattct |
31797355 |
T |
|
| Q |
109 |
gcatcttctaccatggatacatgattagcatgcccagaatatttcaaaggatatgtcaaaactacttgtatgtcttatgtaaaaagagacggtgaaccca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31797354 |
gcatcttctaccatggatacatgattagcatgctcagaatatttcaaaggagttgtcaaaactacttgtacgtcttatgtaaaaagagacggtgaaccca |
31797255 |
T |
|
| Q |
209 |
aagataac |
216 |
Q |
| |
|
|| ||||| |
|
|
| T |
31797254 |
aacataac |
31797247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 31791214 - 31791112
Alignment:
| Q |
105 |
ttctgcatcttctaccatggatacatgattagcatgcccagaatatttcaaaggatatgtcaaaactacttgtatgtcttatgtaaaaagagacggtgaa |
204 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||| |
|
|
| T |
31791214 |
ttctgcatcttctaccatagatgcatgattagcatgcccagaatatttcaaaggatatgtcaaaactacttgtacctc-aatgtaaaaagagtctgtgaa |
31791116 |
T |
|
| Q |
205 |
ccca |
208 |
Q |
| |
|
|||| |
|
|
| T |
31791115 |
ccca |
31791112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 31786057 - 31786007
Alignment:
| Q |
9 |
acatcatcagaatactgcattattgctcatacagggccaaaactaggtaga |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31786057 |
acatcatcagaatactgcattattgctcatacaaggccaaaactaggtaga |
31786007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 31799879 - 31799810
Alignment:
| Q |
106 |
tctgcatcttctaccatggatacatgattagcatgcccagaatatttcaaaggatatgtcaaaactactt |
175 |
Q |
| |
|
||||||||||||| || ||||||| |||| |||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
31799879 |
tctgcatcttctaacacagatacataattaacatgcccatagtattttaaaggatatgtcaaaactactt |
31799810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University