View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15058_low_1 (Length: 445)

Name: NF15058_low_1
Description: NF15058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15058_low_1
NF15058_low_1
[»] chr6 (6 HSPs)
chr6 (189-431)||(22413315-22413559)
chr6 (1-109)||(22412785-22412893)
chr6 (1-108)||(23009131-23009238)
chr6 (1-108)||(23779126-23779233)
chr6 (45-108)||(24657233-24657296)
chr6 (1-108)||(20005641-20005748)
[»] chr1 (5 HSPs)
chr1 (2-108)||(24054235-24054341)
chr1 (1-108)||(16916669-16916776)
chr1 (26-108)||(14781614-14781696)
chr1 (1-91)||(727741-727831)
chr1 (1-108)||(18830738-18830845)
[»] chr5 (10 HSPs)
chr5 (1-108)||(20858941-20859048)
chr5 (1-108)||(28665030-28665137)
chr5 (3-108)||(16523303-16523408)
chr5 (1-108)||(17314835-17314943)
chr5 (3-108)||(16523528-16523633)
chr5 (46-108)||(26835919-26835981)
chr5 (1-108)||(20563854-20563961)
chr5 (1-108)||(19008279-19008386)
chr5 (26-108)||(23388606-23388688)
chr5 (2-91)||(20549443-20549532)
[»] chr2 (4 HSPs)
chr2 (1-108)||(25530705-25530812)
chr2 (1-108)||(24090662-24090769)
chr2 (16-108)||(25535531-25535623)
chr2 (1-108)||(17198125-17198232)
[»] chr4 (6 HSPs)
chr4 (1-107)||(25098091-25098197)
chr4 (1-108)||(11253477-11253584)
chr4 (1-107)||(25094824-25094930)
chr4 (1-108)||(12406426-12406533)
chr4 (1-91)||(17026067-17026157)
chr4 (313-404)||(29916032-29916122)
[»] scaffold0034 (1 HSPs)
scaffold0034 (2-107)||(76674-76779)
[»] scaffold0671 (1 HSPs)
scaffold0671 (16-108)||(699-791)
[»] chr8 (3 HSPs)
chr8 (16-108)||(16404169-16404261)
chr8 (1-108)||(23892937-23893044)
chr8 (1-91)||(19264316-19264406)
[»] chr7 (6 HSPs)
chr7 (1-104)||(13289148-13289251)
chr7 (1-108)||(22066970-22067077)
chr7 (1-109)||(4449235-4449343)
chr7 (1-91)||(16058736-16058826)
chr7 (1-90)||(17190938-17191027)
chr7 (33-109)||(13277759-13277835)
[»] chr3 (6 HSPs)
chr3 (1-108)||(20023276-20023383)
chr3 (7-106)||(16229698-16229797)
chr3 (26-108)||(19167665-19167747)
chr3 (7-88)||(8882852-8882933)
chr3 (27-108)||(12754672-12754753)
chr3 (27-108)||(19575985-19576066)
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-108)||(5828-5935)
scaffold0386 (1-108)||(6438-6545)
[»] scaffold0093 (1 HSPs)
scaffold0093 (46-108)||(43336-43398)
[»] scaffold0016 (1 HSPs)
scaffold0016 (26-108)||(3780-3862)
[»] scaffold0008 (1 HSPs)
scaffold0008 (36-92)||(234614-234670)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 189 - 431
Target Start/End: Original strand, 22413315 - 22413559
Alignment:
Q  189 aaagaataatgaatttttcatcgtgaactttgttcagttggtagaaacaattaataatatatataaagtttgatgttca-gccccgacnnnnnnnn--tg 285  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| || ||| || ||||| ||||||||          ||    
T  22413315 aaagaataatgaatatttcatcgtgaactttgttcagttggtaggaacaatcaataatatatacaaggttcgaggttcaagccccgacaaaaaaaaaatg 22413414  T
Q  286 atgaatttttcttctgcaatgtttataactttgttttatgaaatgataataagtgagtatgtgtaaaacctaatcccttttatttatacttcggtattta 385  Q
    |||||||||||||| |||||||| || |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22413415 atgaatttttcttcagcaatgtt-atgactttgttttacaaaatgataataagtgagtatgtgtaaaacctaatctcttttatttatacttcggtattta 22413513  T
Q  386 ttatattaaagtttgggtcttatggtgttacaatcgatctggattc 431  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  22413514 ttatattatagtttgggtcttatggtgttacaatcgatctggattc 22413559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 22412785 - 22412893
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22412785 ctaattaggtaaccagtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 22412884  T
Q  101 taaataaat 109  Q
    |||||||||    
T  22412885 taaataaat 22412893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 23009131 - 23009238
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||| ||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  23009131 ctaattaggtacccagtggctaaaacccatttagtcaggtggtgctctacctatttaggaaactcccaacggccttatcactttcatagtcaccaaaaga 23009230  T
Q  101 taaataaa 108  Q
    ||||||||    
T  23009231 taaataaa 23009238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 23779233 - 23779126
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||| ||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  23779233 ctaattaggtacccagtggctaaaacccatttagtcaggtggtgctctacctatttaggaaactcccaacggccttatcactttcatagtcaccaaaaga 23779134  T
Q  101 taaataaa 108  Q
    ||||||||    
T  23779133 taaataaa 23779126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 24657233 - 24657296
Alignment:
Q  45 tcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  24657233 tcctacctatttaggaaactcccaacagccttatcacttttatagtcaccaaaagataaataaa 24657296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20005641 - 20005748
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||| |||| | |  |||||| |||||||||||| |||||||||||||||||||||| ||||||| ||||||| |||||||  |  ||||    
T  20005641 ctaattaggtacccagtggatgatgcccattgggtcaggtggtgccctacctatttaggaaactcccaacggcctcatcacttatatagtctacctaaga 20005740  T
Q  101 taaataaa 108  Q
    ||||||||    
T  20005741 taaataaa 20005748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 24054341 - 24054235
Alignment:
Q  2 taattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagat 101  Q
    ||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24054341 taattaggtacccagtggctaaaacccattgggtcaggtggtgccctacctatttaggaaactcccaacggccttatcacttttatagtcaccaaaagat 24054242  T
Q  102 aaataaa 108  Q
    |||||||    
T  24054241 aaataaa 24054235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16916669 - 16916776
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||| || ||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| |||    
T  16916669 ctaattaggtacccagttgctaaaacccattgggtcaggtagtgccctacctatttaggaaactcccaacggccttatcacttctatagtcaccaacaga 16916768  T
Q  101 taaataaa 108  Q
    ||||||||    
T  16916769 taaataaa 16916776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 14781614 - 14781696
Alignment:
Q  26 cccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    |||||| |||||||||||| ||||| |||||||||||||||| ||| |||||| |||| |||||||||||| |||||||||||    
T  14781614 cccattgggtcaggtggtgccctacttatttaggaaactcccaacgaccttattacttctatagtcaccaagagataaataaa 14781696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 727831 - 727741
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtc 91  Q
    |||||||||||||| |||| | | ||||||| |||||| ||||| |||||||||||||||||||||| ||| ||| ||||||| |||||||    
T  727831 ctaattaggtacccagtggatgatacccattgggtcagatggtgccctacctatttaggaaactcccaacgacctcatcacttgtatagtc 727741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 18830845 - 18830738
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |  |||||  ||||||  |||| ||||||| |||||||||||||||    |||||    
T  18830845 ctaattaggtacccagtggctaagacccattgggtcaggtggtgcctgacctaagtaggaacatcccaacggcctcatcacttttatagtctatcaaaga 18830746  T
Q  101 taaataaa 108  Q
    ||||||||    
T  18830745 taaataaa 18830738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 20859048 - 20858941
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| | |||  |||||||||||||||||||| ||||    
T  20859048 ctaattaggtacccagtggctaaaacccattgggtcaggtggtgccctacctatttaggaaactcccaatggctgtatcacttttatagtcaccagaaga 20858949  T
Q  101 taaataaa 108  Q
    ||||||||    
T  20858948 taaataaa 20858941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 28665137 - 28665030
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||| ||  |||||||||||||||| |||||| ||||| ||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  28665137 ctaattaggttcctagtggctaaaacccattgggtcagatggtgccctacctatttaggaaactcccagctgccttatcacttttatagtcaccaaaaga 28665038  T
Q  101 taaataaa 108  Q
    ||||||||    
T  28665037 taaataaa 28665030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 16523303 - 16523408
Alignment:
Q  3 aattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagata 102  Q
    |||||||||||| |||||||||||||||| |||  ||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||    
T  16523303 aattaggtacccagtggctaaaacccattgggtggggtggtgccctacctatttaggaaactcccaacgaccttatcacttctatagtcaccaagagata 16523402  T
Q  103 aataaa 108  Q
    ||||||    
T  16523403 aataaa 16523408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17314835 - 17314943
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcactttt-atagtcaccaaaag 99  Q
    |||||||| ||||| |||||||||||||||| |||||||| |||  ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  17314835 ctaattagttacccagtggctaaaacccatttggtcaggtagtgctctacctatttaggaaacgcccaacggccttatcacttttgatagtcaccaaaag 17314934  T
Q  100 ataaataaa 108  Q
    |||||||||    
T  17314935 ataaataaa 17314943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 16523528 - 16523633
Alignment:
Q  3 aattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagata 102  Q
    |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||||  || ||||||||||| || ||||||||| |||||    
T  16523528 aattaggtacccagtggctaaaacccattgggtcaggtggtgccctacctatttagaaaactcccaccgaccttatcacttctacagtcaccaagagata 16523627  T
Q  103 aataaa 108  Q
    ||||||    
T  16523628 aataaa 16523633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 26835981 - 26835919
Alignment:
Q  46 cctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26835981 cctacctatttaggaaactcccaacggccttatcacttctatagtcaccaaaagataaataaa 26835919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20563854 - 20563961
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||  |||| | |  |||||| ||| |||||||| |||||||||||| ||||||||| ||| ||||||||||| |||||||||||| |||    
T  20563854 ctaattaggtacctagtggatgatgcccattgggttaggtggtgccctacctatttaagaaactcccaacgaccttatcacttctatagtcaccaagaga 20563953  T
Q  101 taaataaa 108  Q
    ||||||||    
T  20563954 taaataaa 20563961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 19008279 - 19008386
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    ||||||||||| || |||| | |  || ||| |||||||||||| ||||||||||||| |||||||| |||| |||||||||| |||| ||||||| |||    
T  19008279 ctaattaggtatccagtggatgatgccaattgggtcaggtggtgccctacctatttagaaaactcccaacgggcttatcacttctatattcaccaagaga 19008378  T
Q  101 taaataaa 108  Q
    ||||||||    
T  19008379 taaataaa 19008386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 23388606 - 23388688
Alignment:
Q  26 cccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    |||||| |||||||||||| ||||||||||||| | |||||| ||||||| ||||||| |||||||  |  ||||||||||||    
T  23388606 cccattgggtcaggtggtgccctacctatttagcagactcccaacggcctcatcacttgtatagtctacctaagataaataaa 23388688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 20549443 - 20549532
Alignment:
Q  2 taattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtc 91  Q
    ||||||||||||| |||| | |  |||||| |||||| ||||| ||||||||||||||||||||   |||||||  |||||| |||||||    
T  20549443 taattaggtacccagtggatgatgcccattgggtcagatggtgccctacctatttaggaaactcttgacggcctcgtcacttgtatagtc 20549532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 25530812 - 25530705
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||  |||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  25530812 ctaattaggtacctagtggataaaacccattgggtcaggtggtgccctacctatttaggaaactcccaacgaccttatcacttttatagtcaccaaaaga 25530713  T
Q  101 taaataaa 108  Q
    | ||||||    
T  25530712 ttaataaa 25530705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 24090662 - 24090769
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||| || ||||||| ||||| |||||||||||| ||||||||||||| |||||||| ||| ||| ||||||||||||||||||| ||||    
T  24090662 ctaattaggtacccagtagctaaaaaccattgggtcaggtggtgccctacctatttagaaaactcccaacgacctcatcacttttatagtcaccataaga 24090761  T
Q  101 taaataaa 108  Q
    ||||||||    
T  24090762 taaataaa 24090769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 25535623 - 25535531
Alignment:
Q  16 gtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    |||||||||||||||||||||| ||| || ||||||||||||||||||||   ||| ||||||||| ||||||||||||||||||| ||||||    
T  25535623 gtggctaaaacccattaggtcatgtgttgccctacctatttaggaaactctgaacgaccttatcacatttatagtcaccaaaagattaataaa 25535531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 17198232 - 17198125
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    ||||| |||||||  |||||||||||||||||||||||||  || |||||||||||||||||||| | ||| ||| ||| ||| |||||||||||| |||    
T  17198232 ctaatcaggtaccaagtggctaaaacccattaggtcaggtcatgccctacctatttaggaaactctcaacgacctgatcgcttctatagtcaccaagaga 17198133  T
Q  101 taaataaa 108  Q
    ||||||||    
T  17198132 taaataaa 17198125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 25098197 - 25098091
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    ||||||||||| || |||||||||||||||  |||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  25098197 ctaattaggtatccagtggctaaaacccatcgggtcaggtggtgccctacctatttaggaaacttccaacggcctcatcacttttatagtcaccaaaaga 25098098  T
Q  101 taaataa 107  Q
    |||||||    
T  25098097 taaataa 25098091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11253477 - 11253584
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    ||||||||||||||  |||||| |||||||| |||||| ||||| ||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  11253477 ctaattaggtacccaatggctagaacccattgggtcagatggtgccctacgtatttaggaaactcccaacgaccttatcaattttatagtcaccaaaaga 11253576  T
Q  101 taaataaa 108  Q
    ||||||||    
T  11253577 taaataaa 11253584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 25094930 - 25094824
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||| | |||||||||||||||| |||||  ||||| |||||||||||||||||||||  ||||||| ||||| |||||||||||||||| |    
T  25094930 ctaattaggtactcagtggctaaaacccatttggtcaaatggtgccctacctatttaggaaactccaaacggcctcatcacatttatagtcaccaaaata 25094831  T
Q  101 taaataa 107  Q
    |||||||    
T  25094830 taaataa 25094824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 12406426 - 12406533
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||  |||| | |  ||||||  ||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||    
T  12406426 ctaattaggtacctagtggatgatgcccattgagtcaggtggtgccctacctatttaggaaactcccaacgaccttatcacttctatagtcaccaataga 12406525  T
Q  101 taaataaa 108  Q
    ||||||||    
T  12406526 taaataaa 12406533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 17026067 - 17026157
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtc 91  Q
    |||||||||||||| |||| | |  |||||| |||||||||||| |||||||||||||||||||||| ||||||| ||||||| |||||||    
T  17026067 ctaattaggtacccagtggatgatgcccattgggtcaggtggtgccctacctatttaggaaactcccaacggcctcatcacttgtatagtc 17026157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 404
Target Start/End: Complemental strand, 29916122 - 29916032
Alignment:
Q  313 actttgttttatgaaatgataataagtgagtatgtgtaaaacctaatcccttttatttatacttcggtatttattatattaaagtttgggtc 404  Q
    |||||||||||||||||||  | |||||||||| ||||| ||||| |  | |||||||||| ||| |||||||||  ||||||||| |||||    
T  29916122 actttgttttatgaaatgacgaaaagtgagtatatgtaacacctattttcctttatttata-ttcagtatttatttaattaaagttggggtc 29916032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 76779 - 76674
Alignment:
Q  2 taattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagat 101  Q
    ||||||||||||  |||||||||||||||| |||| |||||||   |||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  76779 taattaggtacctagtggctaaaacccattgggtccggtggtgctttacctatttaggaaactcccaacggcctcatcacttttatagtcaccaaaagat 76680  T
Q  102 aaataa 107  Q
    ||||||    
T  76679 aaataa 76674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 791 - 699
Alignment:
Q  16 gtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||||    
T  791 gtggctaaaacccattgggtcaggtggtgccctacctatttaggaaactcccaacggccttatcacttcaatagtcaccaagagataaataaa 699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 16404261 - 16404169
Alignment:
Q  16 gtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||||    
T  16404261 gtggctaaaacccattgggtcaggtggtgccctacctatttaggaaactcccaacggccttatcacttcaatagtcaccaagagataaataaa 16404169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 23892937 - 23893044
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    ||||||||||||   ||| |||||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||     
T  23892937 ctaattaggtacttagtgactaaaacccattgggtcaagtggtgccctacctatttaggaaactcccaacggccttatcatttttatagtcaccaaaagg 23893036  T
Q  101 taaataaa 108  Q
    ||||||||    
T  23893037 taaataaa 23893044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 19264406 - 19264316
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtc 91  Q
    |||||||||||||| || ||||||||| ||| |||||||||||| |||||||||||||||||||||| ||  ||| ||||||| |||||||    
T  19264406 ctaattaggtacccagtcgctaaaaccgattgggtcaggtggtgccctacctatttaggaaactcccaaccacctcatcacttgtatagtc 19264316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13289148 - 13289251
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    ||||||||||| || || ||||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||    
T  13289148 ctaattaggtatccagtagctaaaacccatttggtcaggtggtgccctacctatttaggaaactcccaacgaccttatcacttctatagtcaccaagaga 13289247  T
Q  101 taaa 104  Q
    ||||    
T  13289248 taaa 13289251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 22066970 - 22067077
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||| |||| ||||||||||||||||| ||||| ||  |||| |||||||||||||||||||| |||| |||| |||||||| |||||||||||||    
T  22066970 ctaattagttacctggtggctaaaacccattgggtcaagtaatgtcttacctatttaggaaactcccaacggtcttaccacttttacagtcaccaaaaga 22067069  T
Q  101 taaataaa 108  Q
    | ||||||    
T  22067070 tgaataaa 22067077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4449343 - 4449235
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    ||||||||||||||  ||||||||| ||||| |||||||||||| ||||||||||||  |||||||| ||||||| |||| ||||||| | |||  ||||    
T  4449343 ctaattaggtacccaatggctaaaatccattgggtcaggtggtgccctacctatttaaaaaactcccaacggcctcatcagttttatattaaccttaaga 4449244  T
Q  101 taaataaat 109  Q
    |||||||||    
T  4449243 taaataaat 4449235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 16058736 - 16058826
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtc 91  Q
    |||||||||||||  |||| | |  |||||| |||||||||||| |||||||||||||||||||||| ||| ||| ||||||| |||||||    
T  16058736 ctaattaggtacctagtggatgatgcccattgggtcaggtggtgccctacctatttaggaaactcccaacgacctcatcacttgtatagtc 16058826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 17190938 - 17191027
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagt 90  Q
    |||||||||||||| |||| | |  |||||| |||||||||||| ||||||||||||| |||||||| ||  ||| ||||||| ||||||    
T  17190938 ctaattaggtacccagtggatgatgcccattgggtcaggtggtgccctacctatttagaaaactcccaacaacctcatcacttatatagt 17191027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 13277835 - 13277759
Alignment:
Q  33 ggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaat 109  Q
    |||||||||||| |||||||||||||||||||||| |||  || | ||||| |||||||  |  |||||||||||||    
T  13277835 ggtcaggtggtgccctacctatttaggaaactcccaacgatctcaccacttgtatagtctacctaagataaataaat 13277759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20023276 - 20023383
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||  ||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||  ||||||||||| |||||||| |||||||    
T  20023276 ctaattaggtacctagtggctaaaactcattgggtcaggtggtgccctacctatttaggaaactcccaacaaccttatcacttctatagtcatcaaaaga 20023375  T
Q  101 taaataaa 108  Q
    ||||||||    
T  20023376 taaataaa 20023383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 16229698 - 16229797
Alignment:
Q  7 aggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaata 106  Q
    |||||||| ||||||||||| |||| ||||| ||||||   |||||||||| |||||||||  ||| ||||| |||||||||||||||||||||||||||    
T  16229698 aggtacccagtggctaaaactcattgggtcaagtggtgcgttacctatttacgaaactcccagcggtcttatgacttttatagtcaccaaaagataaata 16229797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 19167747 - 19167665
Alignment:
Q  26 cccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    |||||| |||||||||||| ||||||||||||||| |||||| | || |||||||||| |||||||||||| |||||||||||    
T  19167747 cccattgggtcaggtggtgccctacctatttaggacactcccaatggtcttatcacttctatagtcaccaagagataaataaa 19167665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 8882852 - 8882933
Alignment:
Q  7 aggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttata 88  Q
    |||||||  |||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||| | | ||||||| ||||    
T  8882852 aggtacctagtggctaaaacccattgggtcaggtggtgccctacttatttaggaaactcccaacgacatcatcacttgtata 8882933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 12754672 - 12754753
Alignment:
Q  27 ccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    ||||| |||||||||||| |||||||||||||||| ||||| |||| || ||||||| |||||||  |  ||||||||||||    
T  12754672 ccatttggtcaggtggtgccctacctatttaggaagctcccaacggactcatcacttgtatagtctacctaagataaataaa 12754753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 19575985 - 19576066
Alignment:
Q  27 ccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    ||||| |||||||||||| |||||| |||||||||| |||| |||  || ||||||| |||||||  |  ||||||||||||    
T  19575985 ccattgggtcaggtggtgccctaccaatttaggaaagtcccaacgtactcatcacttgtatagtctacctaagataaataaa 19576066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 5828 - 5935
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||| |||| | |  |||||| |||||||||||| ||||||||||||||||||| |  ||||||||||||||| ||||||| |||| |||    
T  5828 ctaattaggtacccagtggatgatgcccattgggtcaggtggtgccctacctatttaggaaactgcaaacggccttatcacttctatagtctccaagaga 5927  T
Q  101 taaataaa 108  Q
    ||||||||    
T  5928 taaataaa 5935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 6438 - 6545
Alignment:
Q  1 ctaattaggtacccggtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaaga 100  Q
    |||||||||||||| |||| | |  || ||| |||||||||||| |||||||||||||||||||  | |||||||||||| || |||||||  ||| |||    
T  6438 ctaattaggtacccagtggatgatgcctattgggtcaggtggtgccctacctatttaggaaactgacaacggccttatcaattctatagtcttcaagaga 6537  T
Q  101 taaataaa 108  Q
    ||||||||    
T  6538 taaataaa 6545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 43398 - 43336
Alignment:
Q  46 cctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  43398 cctacctatttaggaaacttccaacggccttatcacttctatagtcaccaaaagataaataaa 43336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 3862 - 3780
Alignment:
Q  26 cccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaataaa 108  Q
    |||||| |||||||||||| ||||||||||||| | |||||| ||||||| ||||||| |||||||  |  ||||||||||||    
T  3862 cccattgggtcaggtggtgccctacctatttagcagactcccaacggcctcatcacttgtatagtctacctaagataaataaa 3780  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 234670 - 234614
Alignment:
Q  36 caggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtca 92  Q
    ||||||||| ||| |||||||||||||||| | ||||||| ||||||| ||||||||    
T  234670 caggtggtgccctgcctatttaggaaactcgcaacggcctcatcacttgtatagtca 234614  T

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