View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15059_high_1 (Length: 351)
Name: NF15059_high_1
Description: NF15059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15059_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 2972165 - 2971857
Alignment:
| Q |
1 |
caatttttgtcgcggcaaattcacgactgtataaaataacatgtttatcacctcctttccctttttcagcaaatgcacttcatatagtgggaagatctga |
100 |
Q |
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| T |
2972165 |
caatttttgtcccggcaaattcacgactgtataaaataacatgtttatcacctcctttccctttttcagcacatgcacttcatatagtgggaagatctga |
2972066 |
T |
|
| Q |
101 |
cggtggaaaacaggtcgggaagctttcgggataaaatgactcgcatcaaataa--------taaatataataaagagagtgaataagaaaggaaacaaca |
192 |
Q |
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| T |
2972065 |
cggtggaaaacaggtcgggaagctttcgggataaaatgattcacatcaaataggagtgctctaaatataataaagagagtgaataaaaaaggaaacaaca |
2971966 |
T |
|
| Q |
193 |
taactatggatgcaccatattcaacatctcaaccaatcactcctttgttccagatgatgcctaaattgctgaaattatacattccgtcttaatgccttac |
292 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2971965 |
taactatggatgcaccatattcaacatctcaaccaatcactcctttgttctagatgatgcctaaattgctgaaattatacattccctcttaatgccttac |
2971866 |
T |
|
| Q |
293 |
aacatcttc |
301 |
Q |
| |
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||||||||| |
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| T |
2971865 |
aacatcttc |
2971857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 2979476 - 2979366
Alignment:
| Q |
191 |
cataactatggatgcaccatattcaacatctcaaccaatcactcctttgttccagatgatgcctaaattgctgaaattatacattccgtcttaatgcctt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2979476 |
cataactatggatgcaccatattcaacatctcaaccaatcactcctttgttccagatgatgcctaaattgctgaaattatacattccctcttaatgcctt |
2979377 |
T |
|
| Q |
291 |
acaacatcttc |
301 |
Q |
| |
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||||||||||| |
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| T |
2979376 |
acaacatcttc |
2979366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 43239706 - 43239603
Alignment:
| Q |
32 |
taaaataacatgtttatcacctcctttcccttt-ttcagcaaatgcacttcatatagtgggaagatctgacggtggaaaacaggtcgggaagctttcggg |
130 |
Q |
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|||||||||||| ||||||||||| || ||| ||||||| |||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||| |
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| T |
43239706 |
taaaataacatgaccatcacctccttcccgtttcttcagcacatgcacttcatatagtggcaagatctgacgatggaaaacaagtcggaaagctttcggg |
43239607 |
T |
|
| Q |
131 |
ataa |
134 |
Q |
| |
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|||| |
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|
| T |
43239606 |
ataa |
43239603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 11793614 - 11793690
Alignment:
| Q |
76 |
cacttcatatagtgggaagatctgacggtggaaaacaggtcgggaagctttcgggataaaatgactcgcatcaaata |
152 |
Q |
| |
|
|||||||| || ||||||||||||| ||||| ||||| |||||||||| ||||| ||||||| |||||| ||||| |
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| T |
11793614 |
cacttcatgtaaagggaagatctgactgtggataacagttcgggaagctctcgggttaaaatgtttcgcattaaata |
11793690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 41439492 - 41439556
Alignment:
| Q |
73 |
atgcacttcatatagtgggaagatctgacggtggaaaacaggtcgggaagctttcgggataaaat |
137 |
Q |
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|||||||||||||| |||||||||||||||||||||||| | |||||||||| |||| |||| |
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| T |
41439492 |
atgcacttcatataaagggaagatctgacggtggaaaacaatttaggaagctttcaggatgaaat |
41439556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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