View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15059_high_2 (Length: 280)
Name: NF15059_high_2
Description: NF15059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15059_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 48470864 - 48471113
Alignment:
| Q |
18 |
gttctgatggaggaatcaatgaaagattttgtataagaagattggtttatcaatgagttaaaaagtgaagaattttctcctccagtgtagattgataaaa |
117 |
Q |
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| T |
48470864 |
gttctgatggaggaaccaatgaaagattttctataagaagattggtttatcaatgagttaaaaagtgaagaattttgtcctccagtgtagattgataaaa |
48470963 |
T |
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| Q |
118 |
gagatgtaacagatgggttttgaagctttactcttctggtgaaggactcgaatctataatactcagagtcatttataaagatgctgtagtctgtggaatt |
217 |
Q |
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| T |
48470964 |
gagatgtaacagatgggttttgaagctttactcttctggtgaaggacgcgaatctataatactcagagtcatttataaagatgctgtagtctgtggaatt |
48471063 |
T |
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| Q |
218 |
tatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatct |
267 |
Q |
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| T |
48471064 |
tatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatct |
48471113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 48479226 - 48479475
Alignment:
| Q |
18 |
gttctgatggaggaatcaatgaaagattttgtataagaagattggtttatcaatgagttaaaaagtgaagaattttctcctccagtgtagattgataaaa |
117 |
Q |
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| T |
48479226 |
gttctgatggaggaatcaatgaaagattttctataagaagattggtttatcaacgagttaaaaagtgaagaattttctcctccagtgtagattgatagaa |
48479325 |
T |
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| Q |
118 |
gagatgtaacagatgggttttgaagctttactcttctggtgaaggactcgaatctataatactcagagtcatttataaagatgctgtagtctgtggaatt |
217 |
Q |
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| T |
48479326 |
gagatgtaacagaaggattttgaagctttactctggtggtgaaggagtcgaatttagaatactcagagtcatttataaagatgctgtagtctgtggaatt |
48479425 |
T |
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| Q |
218 |
tatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatct |
267 |
Q |
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| T |
48479426 |
tatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatct |
48479475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 48883118 - 48882869
Alignment:
| Q |
18 |
gttctgatggaggaatcaatgaaagattttgtataagaagattggtttatcaatgagttaaaaagtgaagaattttctcctccagtgtagattgataaaa |
117 |
Q |
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| T |
48883118 |
gttctgatggaggaatcaatgaaagattttctataagaagattggtttaacaatgagttaaaaagtgaagaattttgtcctccagtgtagattgataaaa |
48883019 |
T |
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| Q |
118 |
gagatgtaacagatgggttttgaagctttactcttctggtgaaggactcgaatctataatactcagagtcatttataaagatgctgtagtctgtggaatt |
217 |
Q |
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| T |
48883018 |
gagatgtaacagaaggattttgaagctttactctggtggtgaaggagtcgaatttagaatactcagagtcatttgtaaagatgatgtagtctgtggaatt |
48882919 |
T |
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| Q |
218 |
tatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatct |
267 |
Q |
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| T |
48882918 |
tatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatct |
48882869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 48487699 - 48487930
Alignment:
| Q |
22 |
tgatggaggaatcaatgaaagattttgtataagaagattggtttatcaatgagttaaaaagtgaagaattttctcctccagtgtagattgataaaagaga |
121 |
Q |
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| T |
48487699 |
tgatggaagaatcaatgaaagatttcctgttagaagattggtttatcagtgaggaaaaaactgaagagttttctgttttggtgtagattgaaagaagagt |
48487798 |
T |
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| Q |
122 |
tgtaacagatgggttttgaagctttactcttctggtgaaggactcgaatctataatactcagagtcatttataaagatgctgtagtctgtggaatttatg |
221 |
Q |
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| T |
48487799 |
tgtaacagatggattttgaagctttactgtattggtaaaggtggagaatttgtgttcttcagatgagttaataaagatattgtagtttgtggagtttata |
48487898 |
T |
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| Q |
222 |
aaagcaaaagcacataagaggtgtgtgaaaag |
253 |
Q |
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| T |
48487899 |
aaagcaaaagcacataaaaggtgtgtgaaaag |
48487930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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