View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_high_1 (Length: 601)

Name: NF1505_high_1
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1505_high_1
NF1505_high_1
[»] chr8 (8 HSPs)
chr8 (21-509)||(20900361-20900865)
chr8 (417-509)||(23033395-23033487)
chr8 (419-509)||(34784518-34784608)
chr8 (420-509)||(1548139-1548228)
chr8 (422-509)||(3117707-3117794)
chr8 (416-503)||(3277516-3277603)
chr8 (437-493)||(29168561-29168617)
chr8 (418-454)||(15657347-15657383)
[»] chr5 (5 HSPs)
chr5 (418-509)||(7992407-7992498)
chr5 (413-509)||(32325810-32325906)
chr5 (418-509)||(12904979-12905070)
chr5 (418-469)||(34641930-34641981)
chr5 (418-454)||(28827503-28827539)
[»] chr2 (7 HSPs)
chr2 (418-509)||(25438287-25438378)
chr2 (420-509)||(44673172-44673261)
chr2 (416-469)||(21006375-21006428)
chr2 (422-491)||(37154903-37154972)
chr2 (416-469)||(24132209-24132262)
chr2 (418-469)||(6536545-6536596)
chr2 (418-454)||(39574644-39574680)
[»] chr7 (4 HSPs)
chr7 (418-508)||(36167731-36167821)
chr7 (418-507)||(19886572-19886661)
chr7 (417-509)||(12859244-12859336)
chr7 (418-507)||(32775171-32775260)
[»] chr6 (1 HSPs)
chr6 (417-509)||(13425675-13425767)
[»] chr3 (5 HSPs)
chr3 (422-509)||(32130160-32130247)
chr3 (418-509)||(53208684-53208775)
chr3 (418-509)||(7322855-7322946)
chr3 (418-490)||(9454604-9454676)
chr3 (418-454)||(1915484-1915520)
[»] chr4 (6 HSPs)
chr4 (420-509)||(2588490-2588579)
chr4 (420-508)||(5650759-5650847)
chr4 (418-509)||(16497909-16498000)
chr4 (418-493)||(52249500-52249575)
chr4 (435-493)||(39599164-39599222)
chr4 (418-469)||(11156549-11156600)
[»] chr1 (1 HSPs)
chr1 (418-469)||(23963006-23963057)
[»] scaffold0003 (1 HSPs)
scaffold0003 (418-451)||(247194-247227)


Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 21 - 509
Target Start/End: Original strand, 20900361 - 20900865
Alignment:
Q  21 cataggtgtctctaagttacacagctattttttgtttgatacaaaaatggctcttcacgctaaaaatatgttaattggtattttgaatgtattgaaagct 120  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  20900361 cataggtgtctctaagtaacacagctattttttgtttgatacaaaa-tggctcttcacgccaaaaaattgttaattggtattttgaatgtattgaaagct 20900459  T
Q  121 aaattcatccccatgataccaattttatacaatgaggccggtggtgaaaggaacatgtaaagacaatatctgataacctttcatgtctcgtaatgaaggt 220  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  20900460 aaattcatccccacgataccaattttatacaatgaggccggtggtgaaaggaacgtgtaaagacaatatctgataacctttcatatctcgtaatgaaggt 20900559  T
Q  221 tgtgatgtagatttacattcaaatagtcagaaatattcaatta---------tgaagtaggtaggtgtgtggattatcccggatacgggccagtcatgtc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||| |||||||||||||    
T  20900560 tgtgatgtagatttacattcaaatagtcagaaatattcaattatgtaaattgtgaagtaggtaggtgtgtggattatcccggatac-ggccagtcatgtc 20900658  T
Q  312 tttttgaagagaaatgatatttatacaaccttttaaataatattttctctcatgtgctgcaccaacatggaactgttctatgaagtacataaccttgaac 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20900659 tttttgaagagaaatgatatttatacaaccttttaaataatattttatctcatgtgctgcaccaacatggaactgttctatgaagtacataaccttgaac 20900758  T
Q  412 caacat---------caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctactta 502  Q
    ||||||         ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  20900759 caacatgtgctgcaccaaggtagtcaggaacaagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgactgtgcttcgatcctactta 20900858  T
Q  503 cgaaccg 509  Q
    | |||||    
T  20900859 caaaccg 20900865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 417 - 509
Target Start/End: Original strand, 23033395 - 23033487
Alignment:
Q  417 tcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23033395 tcaaggtactcaggaacgagtcccagcatgtaggatcgcatgatcttacgtgccacaacacctcgaccgtgcttcgatcctacttacgaaccg 23033487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 419 - 509
Target Start/End: Complemental strand, 34784608 - 34784518
Alignment:
Q  419 aaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  34784608 aaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacaaaccg 34784518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 420 - 509
Target Start/End: Original strand, 1548139 - 1548228
Alignment:
Q  420 aggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  1548139 aggtagtcaggaacgagtcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaacgtgcttcgatcctacttacgaaccg 1548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 422 - 509
Target Start/End: Original strand, 3117707 - 3117794
Alignment:
Q  422 gtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  3117707 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccg 3117794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 416 - 503
Target Start/End: Original strand, 3277516 - 3277603
Alignment:
Q  416 atcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttac 503  Q
    |||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  3277516 atcaaggtagtcaggaacgaatcccagcatgtaggatcgcacgatcttacgtgccacaacacctcgaccgtgcttcaatcctacttac 3277603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 29168617 - 29168561
Alignment:
Q  437 tcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcga 493  Q
    ||||||| ||||||||| || |||||||||||||||| ||||||||| |||||||||    
T  29168617 tcccagctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcga 29168561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 15657347 - 15657383
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcg 454  Q
    |||||||||||||||| ||||||||||||||||||||    
T  15657347 caaggtagtcaggaacgagtcccagcacgtaggatcg 15657383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 418 - 509
Target Start/End: Complemental strand, 7992498 - 7992407
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  7992498 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 7992407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 413 - 509
Target Start/End: Complemental strand, 32325906 - 32325810
Alignment:
Q  413 aacatcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  32325906 aacaccaaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcgtacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 32325810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 418 - 509
Target Start/End: Complemental strand, 12905070 - 12904979
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||    
T  12905070 caaggtagtcaggaacgagttccagcacgtaggatcgcacgatcttacgtgccacaacacatcgaccatgcttcgatcctacttacgaaccg 12904979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 34641981 - 34641930
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 469  Q
    |||||||| ||||| | |||||||||| ||||||||||| ||||||||||||    
T  34641981 caaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 34641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 28827503 - 28827539
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcg 454  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  28827503 caaggtagacaggaacgagtcccagcacgtaggatcg 28827539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 418 - 509
Target Start/End: Original strand, 25438287 - 25438378
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  25438287 caaggtagtcaggaacgagtcccagcacgtaggatcgcatgatcttacgtgccacagcacctcgaccgtgctttgatcctacttacgaaccg 25438378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 420 - 509
Target Start/End: Original strand, 44673172 - 44673261
Alignment:
Q  420 aggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  44673172 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 44673261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 21006428 - 21006375
Alignment:
Q  416 atcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 469  Q
    |||||||||| ||||| | |||||||||||||||||||||| ||||||||||||    
T  21006428 atcaaggtagccaggatcgagtcccagcacgtaggatcgcacgatcttacgtgc 21006375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 422 - 491
Target Start/End: Complemental strand, 37154972 - 37154903
Alignment:
Q  422 gtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttc 491  Q
    ||||||| |||| |||||| || |||||||||||| ||||||||||||||| ||| |||||| |||||||    
T  37154972 gtagtcaagaacgagtcccggctcgtaggatcgcacgatcttacgtgccacgacatctcgaccgtgcttc 37154903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 416 - 469
Target Start/End: Original strand, 24132209 - 24132262
Alignment:
Q  416 atcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 469  Q
    |||||||||| ||||| | | |||||||||||||||||||| ||||||||||||    
T  24132209 atcaaggtagccaggatcgaatcccagcacgtaggatcgcacgatcttacgtgc 24132262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 6536545 - 6536596
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 469  Q
    |||||||| ||||| | |||||||||| ||||||||||| ||||||||||||    
T  6536545 caaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 6536596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 39574680 - 39574644
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcg 454  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  39574680 caaggtagacaggaacgagtcccagcacgtaggatcg 39574644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 418 - 508
Target Start/End: Complemental strand, 36167821 - 36167731
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaacc 508  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  36167821 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 36167731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 418 - 507
Target Start/End: Original strand, 19886572 - 19886661
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaac 507  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  19886572 caaggtagtcaggaacgagtcccagcacgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 19886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 509
Target Start/End: Complemental strand, 12859336 - 12859244
Alignment:
Q  417 tcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  12859336 tcaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccg 12859244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 418 - 507
Target Start/End: Original strand, 32775171 - 32775260
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaac 507  Q
    |||||||||||||||| |||||||||| |||||||| || || ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  32775171 caaggtagtcaggaacgagtcccagcatgtaggatcacacgaccttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 32775260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 509
Target Start/End: Complemental strand, 13425767 - 13425675
Alignment:
Q  417 tcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  13425767 tcaaggtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttatgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 13425675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 422 - 509
Target Start/End: Original strand, 32130160 - 32130247
Alignment:
Q  422 gtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  32130160 gtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 32130247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 418 - 509
Target Start/End: Complemental strand, 53208775 - 53208684
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||| |||||    
T  53208775 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgtttcgatcctacttacaaaccg 53208684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 418 - 509
Target Start/End: Original strand, 7322855 - 7322946
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||  | ||||||||||||||    
T  7322855 caaggtagccaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcagttctacttacgaaccg 7322946  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 9454604 - 9454676
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgctt 490  Q
    ||||||||||| |||| | |||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||    
T  9454604 caaggtagtcaagaacgattcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgctt 9454676  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 1915484 - 1915520
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcg 454  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  1915484 caaggtagacaggaacgagtcccagcacgtaggatcg 1915520  T

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Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 420 - 509
Target Start/End: Complemental strand, 2588579 - 2588490
Alignment:
Q  420 aggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||| ||||||||||||||||    
T  2588579 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtacttcggtcctacttacgaaccg 2588490  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 508
Target Start/End: Complemental strand, 5650847 - 5650759
Alignment:
Q  420 aggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaacc 508  Q
    |||||||||||||| ||||| ||||||||||||||||  |||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  5650847 aggtagtcaggaacgagtccaagcacgtaggatcgcacaatctcacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 5650759  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 418 - 509
Target Start/End: Complemental strand, 16498000 - 16497909
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 509  Q
    ||||||||||| |||| |||||||||||||||||||||| |||| || |||||||| ||||||||| |||||||| ||||||||||||||||    
T  16498000 caaggtagtcaagaacgagtcccagcacgtaggatcgcacgatcgtatgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccg 16497909  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 493
Target Start/End: Complemental strand, 52249575 - 52249500
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcga 493  Q
    |||||||||||||||  |||||||| ||||||||||||| |||||||||||||||| |||||| || |||||||||    
T  52249575 caaggtagtcaggaatgagtcccagtacgtaggatcgcacgatcttacgtgccacagcacctctaccgtgcttcga 52249500  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 39599222 - 39599164
Alignment:
Q  435 agtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcga 493  Q
    ||||||||| ||||||||| || |||||||||| |||||||||||| | ||||||||||    
T  39599222 agtcccagctcgtaggatcacacgatcttacgttccacaacacctcaattgtgcttcga 39599164  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 11156549 - 11156600
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 469  Q
    |||||||| ||||| | ||| |||||||||||||||||||||||||| ||||    
T  11156549 caaggtagccaggatcgagttccagcacgtaggatcgcatgatcttatgtgc 11156600  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 23963057 - 23963006
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 469  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||||||||||    
T  23963057 caaggtagccaggatcgggtcccagcacgtaggatcgcatgatcttacgtgc 23963006  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Complemental strand, 247227 - 247194
Alignment:
Q  418 caaggtagtcaggaacaagtcccagcacgtagga 451  Q
    |||||||||||||||| |||||||||||||||||    
T  247227 caaggtagtcaggaaccagtcccagcacgtagga 247194  T

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