View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_high_12 (Length: 385)
Name: NF1505_high_12
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_high_12 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 31024627 - 31024987
Alignment:
| Q |
8 |
ttttggaataattttaaagaagttagttactaaggaaactagttcacttgcatgtgcattaattatacattgttatgttctaatttagtcaaacaagtat |
107 |
Q |
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| T |
31024627 |
ttttggaataattttaaagaagttagttactaaggaaactagttcacttgcatgtgcattaattatacattgttatgttctaatttagtcaaacaagtat |
31024726 |
T |
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| Q |
108 |
ttgtttatttttt-aaggaatgatcttggagcaaaatcgttaaggagggaatcaatgaatgaagcatatagaaaattgtaaattgttcaaaatttggtta |
206 |
Q |
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| T |
31024727 |
ttgtttatttttttaaggaatgatcttggagcaaaatcgttaaggagggaatcaatgaatgaag--tatagaaaattgtaaattgttcaaaaattggtta |
31024824 |
T |
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| Q |
207 |
aaacgtgaagaggtgtatttgtctctaatacttacagagaaggaagaggcatgtgtgtataccattctggagttcagcagtcccacatcgaaactatgta |
306 |
Q |
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| T |
31024825 |
aaatgagaagaggtgtatttgtctctaatacttacagagaaggaagaggcatgtgtgtataccattctggagttcagcagtcccaaatcgaaactatgta |
31024924 |
T |
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| Q |
307 |
aattatagacacaaaactttacctataaaacattagaatagtgcttttggggactcaagtttt |
369 |
Q |
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| T |
31024925 |
aattatagacacaaaactttacctataaaagattagaatagtgcttttggggactcaagtttt |
31024987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 31072522 - 31072878
Alignment:
| Q |
8 |
ttttggaataattttaaagaagttagttactaaggaaactagttcacttgcatgtgcattaattatacattgttatgtt---ctaatttagtcaaacaag |
104 |
Q |
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| T |
31072522 |
ttttggaataactt-aaacaagttagttacggaggaaactagttcccttgcatgtgcattaattatacattattatgttgttctaccttggtcaaacatg |
31072620 |
T |
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| Q |
105 |
tatttgtttattttttaaggaatgatcttggagcaaaatcgttaaggagggaatcaa-tgaatgaagcatatagaaaattgtaaatt-gttcaaaatttg |
202 |
Q |
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| T |
31072621 |
caatttttttatttttcaggaatgatcttggagcaaaatcctcaaggagggaatcaaatgaatgaagcata--gaaaattgtaaatttgttcaaaatttg |
31072718 |
T |
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| Q |
203 |
gttaaaacgtgaagaggtgtatttgtctctaatacttacagagaaggaagaggcatgtgtgtataccattctggagttcagcagtcccacatcgaaacta |
302 |
Q |
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| T |
31072719 |
tttaaaacgagaagaggtgtatttgtctctaatacttacagagaaggaaaaggc--gtgtgtatactattctggagttgagcagtcccacatcaaaacta |
31072816 |
T |
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| Q |
303 |
tgtaaattatagacacaaaactttacctataaaacattagaatagtgcttttggggactcaagtttt |
369 |
Q |
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| T |
31072817 |
tgtaaattataaacacacaactttacctataaa-----agaatagttcttttagggactcatgtttt |
31072878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 31065305 - 31065401
Alignment:
| Q |
245 |
gaaggaagaggcatgtgtgtataccatt---ctggagttcagcagtcccacatcgaaactatgtaaattatagacacaaaactttacctataaaaca |
338 |
Q |
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| T |
31065305 |
gaaggaagaggcgtgtatgtataccattattctagagttcagcagtcccacatcgaaactctgtaactaatagacacaaaaagttacctataaaaca |
31065401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 33559719 - 33559896
Alignment:
| Q |
42 |
gaaactagttcacttgcatgtgcattaattatacattgttatgttctaat---ttagtcaaacaagtatttgtttattttttaaggaatgatcttggagc |
138 |
Q |
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| T |
33559719 |
gaaactagttcacttgcatgtgcatta----tacgttattatgttgttatactttagtcaaacaattaatttttt---ttttcaggaatgatcttgaagc |
33559811 |
T |
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| Q |
139 |
aaaatcgttaaggagggaatcaatgaatgaagcatatagaaaattgtaaattgttcaaaatttggttaaaacgtgaagaggtgtatt |
225 |
Q |
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| T |
33559812 |
aaattcctcaaggagggaatcaatgaatgaagc--agagaaaattgtaaatggttcaatatttgggtaagacgagaagaggtgtatt |
33559896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 33561198 - 33561260
Alignment:
| Q |
285 |
agtcccacatcgaaactatgtaaattatagacacaaaactttacctataaaacattagaatag |
347 |
Q |
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| T |
33561198 |
agtcccacatcgaaactgtgtcaataacagacacgaaactttacctataaaataatagaatag |
33561260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 336
Target Start/End: Complemental strand, 7682 - 7617
Alignment:
| Q |
271 |
ttctggagttcagcagtcccacatcgaaactatgtaaattatagacacaaaactttacctataaaa |
336 |
Q |
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| T |
7682 |
ttcttgagttaagctgtcccacatcgaaactgtgtaaataattgacagaaaaatttagctataaaa |
7617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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