View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_high_17 (Length: 336)
Name: NF1505_high_17
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 31014383 - 31014698
Alignment:
| Q |
1 |
aaagagcaaaagagggtcaaatttctgtgcttgaattatcttttgtagggactatgcaatatccttccagaaaataacattatatccactgtgctatatg |
100 |
Q |
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| T |
31014383 |
aaagagcaaaagagggtcaaatttctgtgcttgaattatcttttgtagggactatgacatatccttcaagaaaataacattatatccactgtgctatatg |
31014482 |
T |
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| Q |
101 |
gtttttaagaaatagtttctgcaatgaggtttatatcaatgttataggcatttgatgtgcagggacgtacttgaagtttgcgtatattttctgcagtaat |
200 |
Q |
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| T |
31014483 |
-tatttaagaaatagtttctgcagtgtagtttatatcaatgttataggcatttgatgtgcagggacgtacttgaagtttgcgtatattttctgcagtaat |
31014581 |
T |
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| Q |
201 |
agttttgaacataaaatgaaaatgaaaaggtgttgacataagacaatgttattttgcagtgattattgttccctgtaagcattttactttgtcttctgcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
31014582 |
agttttgaacataaaatgaaaatgaaaaggtgttgacataagacaatgttattttgcagtgattattgttcccggtatgcattttactttgtcttctgcc |
31014681 |
T |
|
| Q |
301 |
catcatcagttcagatg |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
31014682 |
catcatcagttcagatg |
31014698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 31192636 - 31192955
Alignment:
| Q |
1 |
aaagagcaaaagagggtcaaatttctgtgcttgaattatcttttgtagggactatgcaatatccttccagaaaataacattatatccactgtgctatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31192636 |
aaagagcaaaagagggtcaaatttctgtgcttgaattatcttttgtagggactatgcaatatccttccagaaaataacattatatccactgtgctatatg |
31192735 |
T |
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| Q |
101 |
gtttttaagaaatagtttctgcaatgaggtttatatcaatgttataggcatttgatgtgcaggga---cgtacttgaagtttgcgtatattttctgcagt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| |
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| T |
31192736 |
gtttttaagaaatagtttctgcaatgaggtttatatcaatgttataggcatttgatgtgcagggacgccgcacttgaagtttgcgtaaattttctgcagc |
31192835 |
T |
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| Q |
198 |
aatagttttgaacataaaatgaaaatgaaaaggtgttgacataagacaatgttattttgcagtgattattgttccctgtaagcattttactttgtcttct |
297 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |
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| T |
31192836 |
aatagttttgaacacaacatgaaaatgaaaaggtgttgacaaaagacaatgttattttgcagtgattattgttcccggtatgaattttactttgtcttct |
31192935 |
T |
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| Q |
298 |
gcccatcatcagttcagatg |
317 |
Q |
| |
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|||||||||||||||||||| |
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| T |
31192936 |
gcccatcatcagttcagatg |
31192955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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