View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1505_high_30 (Length: 258)
Name: NF1505_high_30
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 23177609 - 23177853
Alignment:
| Q |
7 |
aataattctaaccaagcaattttatggcagagttttgatcaccccacagatacccttttgcctggaatgaacataggctacgatactgacataggacaca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23177609 |
aataattctaaccaagcaattttatggcagagttttgatcaccccacagatacccttttgcctggaatgaacataggctacgatactgacacaggacaca |
23177708 |
T |
|
| Q |
107 |
cttggtcattgagatcatggaagagtacagacgacccctcttcaggaccatatacccttcaatatgattctcgctctgcgaatctgtctgttagtaaagg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23177709 |
cttggtcattgagatcatggaagagtacagacgacccctcttcaggaccatatacccttcaatatgattctcgctctgcgaatctgtctgttagtaaagg |
23177808 |
T |
|
| Q |
207 |
ttcaaatgttttgtggattgacggtagttccaatttttcttttca |
251 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23177809 |
ttcaaatgttttgtggattgacggtaattccaatttttcttttca |
23177853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 23186738 - 23186956
Alignment:
| Q |
7 |
aataattctaaccaagcaattttatggcagagttttgatcaccccacagatacccttttgcctggaatgaacataggctacgatactgacataggacaca |
106 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||| |||||||||| | |||| |||||||| ||| ||||| | |
|
|
| T |
23186738 |
aataagtctaaccaagtaattttatggcagagctttgataaccccaccgatacccttttacctggaatgaccttaggacacgatacttacacaggacgta |
23186837 |
T |
|
| Q |
107 |
cttggtcattgagatcatggaagagtacagacgacccctcttcaggaccatatacccttcaatatgattctcgctctgcgaatctgtctgttagtaaagg |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| | ||||||| ||| || | ||||||||| ||| || | |||| |||| |||||| || |
|
|
| T |
23186838 |
cttggtcattgagatcatggaagcgtacagacgacccctccacgggaccatttactctgcgctatgattctggctttgggtatctatctgatagtaatgg |
23186937 |
T |
|
| Q |
207 |
ttcaaatgttttgtggatt |
225 |
Q |
| |
|
|||||||||| | |||||| |
|
|
| T |
23186938 |
ttcaaatgttgtatggatt |
23186956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 21182334 - 21182232
Alignment:
| Q |
25 |
attttatggcagagttttgatcaccccacagatacccttttgcctggaatgaacataggctacgatactgacataggacacacttggtcattgagatcat |
124 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| || |||||| | ||| ||| |||||| ||| |||||||||| |
|
|
| T |
21182334 |
attttatggcagagttttaatcaccccacggatacccttttacctggaatgaacatcggacacgatattaacacagggtacactttgtctttgagatcat |
21182235 |
T |
|
| Q |
125 |
gga |
127 |
Q |
| |
|
||| |
|
|
| T |
21182234 |
gga |
21182232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University