View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_high_35 (Length: 250)
Name: NF1505_high_35
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3745544 - 3745782
Alignment:
| Q |
1 |
ctctgttacatgttccattggataaaaaggatgtgtatgctctaaatctgtgtcggtatccacttgacgggtatttagcagattttaaaaatctacgagt |
100 |
Q |
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| T |
3745544 |
ctctgttacatgttccattggataaaaaggatgtgtatgctctaaatctgtgtcggtatccacttgacgggtatttagcagatttcaaaaatctacgagt |
3745643 |
T |
|
| Q |
101 |
aacannnnnnnaatagaaaaaattgcaattaagtagaatattttcatcctgtcttttgacgacacaagaaaattatacacagaaattaatacagtgcact |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745644 |
aacatttttttaatagaaaaaattgcaattaagtagaatattttcatcctgtcttttgacgacacaagaaaattatacacagaaattaatacagtgcact |
3745743 |
T |
|
| Q |
201 |
cttacaccaatcaataaataaaatacatcacacattcat |
239 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
3745744 |
cttacaccaatcaattaataaaatacatcacacattcat |
3745782 |
T |
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